Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02339 ATGTTATTTGCAAATATGTGTCTCCTAACAGCAACTGACTTGAAGCGTATTTTTGAGAAAGTGGACGTGAATGGCGACGGATTGGTGAGCCTTGAGGAACTGAATCGATTGCTTCAGATGACGGGCAATTCCCAATATAGCATAGAAGAGTTGGAATCACTTGTGGAAAAGAAAAGTCTTGGTTTCAGTGATTTCTTGTTCTTTTACAACTCAATATCGGAGCAGAACAAGGGAGAGAGCAAAGGAAGTGAGTTGGAGAGCGACCTGGCCAAGACCTTTGAGGTGTTTGACTTGGACGGAGATGGTTTCATCACAAGCCAAGACCTTGAGTCTGTCTTGAAGAGGCTTGGCTTCTGGGATCAAACACATGCCAAGGATTGCAGAACCATGATTCGTTTCTATGACACCAATTTCGATGGTCGCCTTGATTTTCAGGAATTCAAGACCATGATGTTGCTCACCAAAGCTTGA 471 0.4374 MLFANMCLLTATDLKRIFEKVDVNGDGLVSLEELNRLLQMTGNSQYSIEELESLVEKKSLGFSDFLFFYNSISEQNKGESKGSELESDLAKTFEVFDLDGDGFITSQDLESVLKRLGFWDQTHAKDCRTMIRFYDTNFDGRLDFQEFKTMMLLTKA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02339 156 Pfam EF-hand domain pair 87 151 IPR002048 GO:0005509
Gma04g02339 156 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 155 - -
Gma04g02339 156 SMART efh_1 88 116 IPR002048 GO:0005509
Gma04g02339 156 SMART efh_1 13 41 IPR002048 GO:0005509
Gma04g02339 156 SMART efh_1 126 154 IPR002048 GO:0005509
Gma04g02339 156 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Gma04g02339 156 CDD EFh 88 151 IPR002048 GO:0005509
Gma04g02339 156 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Gma04g02339 156 Gene3D - 72 152 - -
Gma04g02339 156 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Gma04g02339 156 SUPERFAMILY EF-hand 13 153 IPR011992 -
Gma04g02339 156 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 6 155 - -
Gma04g02339 156 Gene3D - 10 71 - -
Gma04g02339 156 Pfam EF hand 13 40 IPR002048 GO:0005509
Gma04g02339 156 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Gma04g02339 156 ProSiteProfiles EF-hand calcium-binding domain profile. 122 156 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02339 Gma-Chr4 53817449 53818235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02339 9 152 EF-hand Containing Proteins AT1G21550 43.243 3.49e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02339 K13448 - gmx:100527117 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02339 04 53817449 53818235 Gma04g02339 04 53817449 53818235 ECH
Gma14g01445 14 30771526 30772701 Gma04g02339 04 53817449 53818235 PCT
Gma04g02339 04 53817449 53818235 Gma14g01445 14 30771526 30772701 PCT