Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02089 ATGGCTATGGAGAACGCCGGGAATTTAGAAGCGGCCATAGAACAATTGCTGAATGCGGAGAAGCAAGCGAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTCACTGAAATTTTACGGATGTGCTTCGAAGCGCGTGCCTGGAAAACCCTCAATGACCAGATTGTTCTCTTGTCCAAACGCCGTGGCCAGCTTAAGCAGGCTGTGACAGCAATGGTCCAGCAGGCTATGCAATATATTGATGAGACACCAGATCTTGAAACTCGTATAGAACTCATCAAAATCTTGAACAGTGTATCTGCAGGAAAGATATACGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATCAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTACGAGAGTGTTTGATGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGTTGATATACCATCTCTACCGGAGTTGAAGCGAATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACCGCATGATCCAATGCAGTCAAGCCTTCTCAATTCTACCTTGGAGGATAAGAATCTGTCTGAGATTCCAAACTTTAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGGATGAATTTGAGAATGAGAGTAACTTAGGAAAGAATTTGGGTGAAAAAGCAGCTGAAGATCTGAGGGAAAGAGTAATTGAACATAATATTATTGTTATATCAAAATACTATGGAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCTAAGGATAGCAATGACGTTCTTAACTCATGGGCAGCAAACTTGGAGAGGCTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAA 1332 0.4167 MAMENAGNLEAAIEQLLNAEKQARLAGDVAATRNAVTEILRMCFEARAWKTLNDQIVLLSKRRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKILNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADVSKEKKKPKEGDNVVEEAPVDIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDSYKDEFENESNLGKNLGEKAAEDLRERVIEHNIIVISKYYGKITLKRLAELLCLSVQKAEKHLSDMVVSKALVAKIDRPMGIVCFQRAKDSNDVLNSWAANLERLLDLVEKSCHQIHKETMVHKAALKV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02089 443 ProSiteProfiles PCI domain profile. 234 404 IPR000717 -
Gma04g02089 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 3 442 IPR040134 -
Gma04g02089 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 3 442 - -
Gma04g02089 443 Gene3D - 331 408 IPR036388 -
Gma04g02089 443 SMART PINT_4 333 419 IPR000717 -
Gma04g02089 443 SUPERFAMILY "Winged helix" DNA-binding domain 332 409 IPR036390 -
Gma04g02089 443 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 406 438 IPR040896 -
Gma04g02089 443 Pfam PCI domain 292 400 IPR000717 -
Gma04g02089 443 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02089 Gma-Chr4 51365577 51371287 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02089 K03035 - gmx:100793755 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02089 04 51365577 51371287 Gma06g01322 06 12435656 12440686 GST