Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01943 ATGGAGAACACTGCTTTGTGTGTACTATGGTTTATACTACTCTTGTTGGGGTGTGTCATTTCCTCAGAATCTAAGTATATAAGGTACAACACAACATCGACCATTGTTCCTGGGAAACTCAACGTTCACTTGGTCCCTCACACTCACGATGATGTTGGATGGTTGAAGACCATTGACCAGTACTATGTTGGTTCCAACAACTCAATTCAGGGGGCGTGCGTTCAAAACGTGCTCGATTCCCTGGTACCTGCATTGCTGGCAGACAAGAATCGCAAGTTCATATATGTTGAGCAGGCATTTTTCCAGCGATGGTGGAGGGAACAAAGTGATGCTATCCAGAACATAGTCAAGGAACTGGTCAACACTGGTCAATTGGAGTTCATAAATGGTGGTTTTTGTATGCATGATGAGGCTGCTACCCATTACATTGACATGATTGATCAGACAACTCTTGGACATCAATTTATCAAAGAAGAATTTGGAGTGACTCCGAGAATAGGGTGGCAGATTGATCCGTTTGGACATTCTGCTGTGCAGGCCTACTTGTTGGGGGCAGAGGTTGGATTTGACTCTCTATTCTTTGCACGGATTGATTACCAAGACAGAGCTAAGAGAAAAGATGAAAAAACTCTTGAAGTTGTGTGGCGGGGCTCCAGGAGCCTTGGTTCATCAGCACAGATATTTTCTGGTGCGTTCCCTGAGAATTATGAACCTCCCAGTAATTTCTACTATGAAGTAAATGACGATTCTCCCATTGTTCAGGATGATGTCAGTTTATTTGATTACAATGTCCCTGAAAGAGTAAATGAGTTTGTGGCAGCTGCAATATCACAGGCCAATATTACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACAAACCTGGTTTCGGCAATTGGACAAGTTTATTCACTATGTTAATCAAGATGGCCGTGTTCATGCCTTATACTCGACTCCATCAATATATACTGATGCAAAACATGCTGCCAATGAGGCCTGGCCAATAAAGACCGATGACTTCTTTCCGTATGCAGATCGTGTAAATGCCTACTGGACTGGGTATTTTACAAGCAGGCCAGCAATCAAAGGTTATGTCAGATTGATGAGTGGCTATTACTTGGCAGCGAGGCAGTTGGAATATTTTAAAGGGAAGAGTGCCTTAGGTCCCAACACTGACTCTTTGGCTGAAGCTTTGGCGATTGCTCAACACCATGACGCAGTATCTGGTACAGAAAAACAGCATGTTGCTAATGATTATGCTAAACGACTTTCAATAGGTTACACAGAGGCTGAGAAAGTTGTTGCAGTATCACTTGCTTGCTTGACAGAGGGAGCAACCAAAACAGGTTGTAAGAACCCACAGACTAAATTTCAACAGTGTCCACTTCTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATTTCTCAAATGGGAAAAACTTGGTAATTGTTGTTTACAATCCTCTAGGATGGAAAAGAGAGGATATCATAAGGATTCCTGTTGTCAATGAAAATGTTGTTCGGGATTCTAGTGGGAAAAAGATCCAATCCCAGCTGGTGCCGATACTTGATGATTTTCTTGGTTTAAGAAACTACCACACTGTGGCATACTTGGGAGTGTCTCCAACTGTAAAACCCAAATACTGGCTTGCTTTTTCAGCAGCTGTTCCTCCACTCGGTTTTAGCACTTACTATGTATCCTATGCCAAAAAAGAAGCTACTATTTCAGATAGAGATACAGCTTACCAATCATGGAATAAGAGTGATACAATTACAGTGGGCCTAAAAAACTTGAAACTAGTTTATTCTGTGAAGGAAGGGAAACTTACTAAATATATCAACAGCAGAAGCAAGGTCAAAGAACCTCTAGAGCAGGCATATAAATTTTACACTGGGTATGGAAATGATGGAACAGAAACTGCTCAGGCTTCTGGAGCATATATTTTTCGCCCTGATGGTTCACCTTCTCCCATCAAATCCAACGGGAAGTCTCCTCTCACAGTTTTTCGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAGTCCATGGATATACCAGACTACTAGACTGTACAAGGGGAAAGAACATGCTGAAGTTGAATTCATTGTTGGACCTATACCCATTGATGATGGAGATGGCAAAGAAATCGCAACTGAAATCAAAACAAATCTAGCAAGCAACAAAACCTTCTATACTGATTCCAATGGACGTGATTTCATTGAACGTGTTCGAGACTATAGAAAAGACTGGCACTTGGAAGTAAATCAACCTGTAGCTGGAAATTATTACCCTATCAACCTTGGGATTTACCTGAAAGATAAAAGCAAAGAGTTTTCTATATTGGTAGATAGAGCTGTGGGGGGCTCCAGCATCATAGATGGGCAATTGGAGCTAATGGTTCATAGGAGGTTACTTCAGGATGATTCCAGAGGTGTTGCAGAGGCACTGAATGAAACAGTTTGCATCCATGATAAGTGCACCGGGTTAACTGTGCTAGGGAAGTACTATTTCAGAATTGATCCTGTAGGAGAGGGTGCCAGATGGCGTCGATCATTTGGTCAGGAGATATACTCACCCTTGCTTTTAGCCTTCACAGAGAGTGAAGGTCACTGGGGAGATTCTCATGTCACAACCTTCTCAGGAATAGATTCCTCATACAACTTACCAGATAACGTTGCCATAGTAACTCTCCAGGATCTGGGTGATGGAAAAGTTCTCCTTCGGCTGGCACACTTATACGAGATTGACGAGGACAAGTATCTTTCGGTTAAGGCAACTGTAGAACTTAAAAAGGTGTTTCCCAACAAGCAGATAAACAAAATAACTGAAGTGAGCTTATCAGCAAACCAAGAAAGAGATGAAATGGAGAGGAAGAGATTGGTTTGGCAAGTTAAAGGGTCACCTCCAGAACCTAAGGTGTGGAGGGGAGGACCGGTAGATCCAGAAAATCTAATTGTAGAACTTGCTCCAATGGAAATAAGGACTTTTATTATCAGTTTTAGGCATTAA 3036 0.4203 MENTALCVLWFILLLLGCVISSESKYIRYNTTSTIVPGKLNVHLVPHTHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRKFIYVEQAFFQRWWREQSDAIQNIVKELVNTGQLEFINGGFCMHDEAATHYIDMIDQTTLGHQFIKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDEKTLEVVWRGSRSLGSSAQIFSGAFPENYEPPSNFYYEVNDDSPIVQDDVSLFDYNVPERVNEFVAAAISQANITRTNHIMWTMGTDFKYQYAQTWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNAYWTGYFTSRPAIKGYVRLMSGYYLAARQLEYFKGKSALGPNTDSLAEALAIAQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKVVAVSLACLTEGATKTGCKNPQTKFQQCPLLNISYCPASEVDFSNGKNLVIVVYNPLGWKREDIIRIPVVNENVVRDSSGKKIQSQLVPILDDFLGLRNYHTVAYLGVSPTVKPKYWLAFSAAVPPLGFSTYYVSYAKKEATISDRDTAYQSWNKSDTITVGLKNLKLVYSVKEGKLTKYINSRSKVKEPLEQAYKFYTGYGNDGTETAQASGAYIFRPDGSPSPIKSNGKSPLTVFRGPIVHEVHQKISPWIYQTTRLYKGKEHAEVEFIVGPIPIDDGDGKEIATEIKTNLASNKTFYTDSNGRDFIERVRDYRKDWHLEVNQPVAGNYYPINLGIYLKDKSKEFSILVDRAVGGSSIIDGQLELMVHRRLLQDDSRGVAEALNETVCIHDKCTGLTVLGKYYFRIDPVGEGARWRRSFGQEIYSPLLLAFTESEGHWGDSHVTTFSGIDSSYNLPDNVAIVTLQDLGDGKVLLRLAHLYEIDEDKYLSVKATVELKKVFPNKQINKITEVSLSANQERDEMERKRLVWQVKGSPPEPKVWRGGPVDPENLIVELAPMEIRTFIISFRH 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01943 1011 Pfam Glycosyl hydrolases family 38 N-terminal domain 41 352 IPR000602 GO:0004559|GO:0006013
Gma04g01943 1011 Pfam Glycosyl hydrolases family 38 C-terminal domain 605 819 IPR011682 GO:0004559|GO:0006013
Gma04g01943 1011 SUPERFAMILY Galactose mutarotase-like 463 1009 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma04g01943 1011 SMART Alpha_mann_mid_2 357 431 IPR015341 GO:0004559|GO:0006013
Gma04g01943 1011 Coils Coil 947 967 - -
Gma04g01943 1011 Gene3D - 477 599 IPR013780 -
Gma04g01943 1011 SUPERFAMILY Families 57/38 glycoside transferase middle domain 356 450 IPR028995 -
Gma04g01943 1011 Gene3D Glycoside hydrolase 38, N terminal domain 40 320 IPR027291 -
Gma04g01943 1011 Gene3D - 600 867 - -
Gma04g01943 1011 PANTHER ALPHA-MANNOSIDASE 14 1010 - -
Gma04g01943 1011 SUPERFAMILY Glycoside hydrolase/deacetylase 29 353 IPR011330 GO:0005975
Gma04g01943 1011 Gene3D Glycoside hydrolase family 38, central domain 321 399 IPR037094 GO:0004559|GO:0006013
Gma04g01943 1011 PANTHER ALPHA-MANNOSIDASE 14 1010 - -
Gma04g01943 1011 Pfam Alpha mannosidase middle domain 357 449 IPR015341 GO:0004559|GO:0006013
Gma04g01943 1011 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 900 1006 IPR041147 -
Gma04g01943 1011 Gene3D Glycoside hydrolase family 38, central domain 400 455 IPR037094 GO:0004559|GO:0006013
Gma04g01943 1011 CDD GH38N_AMII_LAM_like 40 316 - -
Gma04g01943 1011 Gene3D - 885 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01943 Gma-Chr4 49858389 49866861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01943 9 923 Glycoside Hydrolase AT5G13980 70.390 0.0 1349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01943 K01191 - gmx:100798150 2058.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01461 06 13961791 13970133 Gma04g01943 04 49858389 49866861 ECH
Gma04g01943 04 49858389 49866861 Gma04g01943 04 49858389 49866861 ECH
Gma04g01943 04 49858389 49866861 Gma06g01461 06 13961791 13970133 GST