Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01900 ATGGCGGCCACCGCTTCCAGAACCACCCGATTCTCTTCTTCCTCTTCACACCCCACCTTCCCCAAACGCATTACTAGATCCACCCTCCCTCTCTCTCATCAAACCCTCACCAAACCCAACCACGCTCTCAAAATCAAATGTTCCATCTCCAAACCCCCCACGGCGGCGCCCGTCACCAAGGAAGCGCCGACCACAGAGCCCTTCGTGTCACGGTTCGCCTCCGGCGAACCTCGCAAGGGCGCGGACATCCTTGTGGAGGCGCTGGAGAGGCAGGGCGTGACGACGGTGTTCGCGTACCCCGGCGGTGCGTCGATGGAGATCCACCAGGCGCTCACGCGCTCCGCCGCCATCCGCAACGTGCTCCCGCGCCACGAGCAGGGCGGCGTCTTCGCCGCCGAAGGCTACGCGCGTTCCTCCGGCCTCCCCGGCGTCTGCATTGCCACCTCCGGCCCCGGCGCCACCAACCTCGTGAGCGGCCTCGCCGACGCTTTAATGGACAGCGTCCCAGTCGTCGCCATCACCGGCCAGGTCCCCCGCCGGATGATCGGCACCGACGCCTTCCAAGAAACCCCGATCGTGGAGGTGAGCAGATCCATCACGAAGCACAACTACCTCATCCTCGACGTCGACGACATCCCCCGCGTCGTCGCCGAGGCTTTCTTCGTCGCCACCTCCGGCCGCCCCGGTCCGGTCCTCATCGACATTCCCAAAGACGTTCAGCAGCAACTCGCCGTGCCTAATTGGGACGAGCCCGTTAACCTCCCCGGTTACCTCGCCAGGCTGCCCAGGCCCCCCGCCGAGGCCCAATTGGAACACATTGTCAGACTCATCATGGAGGCCCAAAAGCCCGTTCTCTACGTCGGCGGTGGCAGTTTGAATTCCAGTGCTGAATTGAGGCGCTTTGTTGAACTCACTGGTATTCCCGTTGCTAGCACTTTAATGGGTCTTGGAACTTTTCCTATAGGTGATGAATATTCCCTTCAGATGCTGGGTATGCATGGTACTGTTTATGCTAACTATGCTGTTGACAATAGTGATTTGTTGCTTGCCTTTGGGGTAAGGTTTGATGACCGTGTTACTGGGAAGCTTGAGGCTTTTGCTAGTAGGGCTAAGATTGTTCACATTGATATTGATTCTGCCGAGATTGGGAAGAACAAGCAGGCGCACGTGTCGGTTTGCGCGGATTTGAAGTTGGCCTTGAAGGGAATTAATATGATTTTGGAGGAGAAAGGAGTGGAGGGTAAGTTTGATCTTGGAGGTTGGAGAGAAGAGATTAATGTGCAGAAACACAAGTTTCCATTGGGTTACAAGACATTCCAGGACGCGATTTCTCCGCAGCATGCTATCGAGGTTCTTGATGAGTTGACTAATGGAGATGCTATTGTTAGTACTGGGGTTGGGCAGCATCAAATGTGGGCTGCGCAGTTTTACAAGTACAAGAGACCGAGGCAGTGGTTGACCTCAGGGGGTCTTGGAGCCATGGGTTTTGGATTGCCTGCGGCTATTGGTGCTGCTGTTGCTAACCCTGGGGCTGTTGTGGTTGACATTGATGGGGATGGTAGTTTCATCATGAATGTTCAGGAGTTGGCCACTATAAGAGTGGAGAATCTCCCAGTTAAGATATTGTTGTTGAACAATCAGCATTTGGGTATGGTGGTTCAGTGGGAGGATAGGTTCTACAAGTCCAATAGAGCTCACACCTATCTTGGAGATCCGTCTAGCGAGAGCGAGATATTCCCAAACATGCTCAAGTTTGCTGATGCTTGTGGGATACCGGCAGCGCGAGTGACGAAGAAGGAAGAGCTTAGAGCGGCAATTCAGAGAATGTTGGACACCCCTGGCCCCTACCTTCTTGATGTCATTGTGCCCCATCAGGAGCATGTGTTGCCGATGATTCCCAGTAATGGATCCTTCAAGGATGTGATAACTGAGGGTGATGGTAGAACGAGGTACTGA 1956 0.5486 MAATASRTTRFSSSSSHPTFPKRITRSTLPLSHQTLTKPNHALKIKCSISKPPTAAPVTKEAPTTEPFVSRFASGEPRKGADILVEALERQGVTTVFAYPGGASMEIHQALTRSAAIRNVLPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALMDSVPVVAITGQVPRRMIGTDAFQETPIVEVSRSITKHNYLILDVDDIPRVVAEAFFVATSGRPGPVLIDIPKDVQQQLAVPNWDEPVNLPGYLARLPRPPAEAQLEHIVRLIMEAQKPVLYVGGGSLNSSAELRRFVELTGIPVASTLMGLGTFPIGDEYSLQMLGMHGTVYANYAVDNSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQAHVSVCADLKLALKGINMILEEKGVEGKFDLGGWREEINVQKHKFPLGYKTFQDAISPQHAIEVLDELTNGDAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPGAVVVDIDGDGSFIMNVQELATIRVENLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSSESEIFPNMLKFADACGIPAARVTKKEELRAAIQRMLDTPGPYLLDVIVPHQEHVLPMIPSNGSFKDVITEGDGRTRY 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01900 651 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 44 650 IPR045229 -
Gma04g01900 651 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 74 255 IPR029061 -
Gma04g01900 651 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 465 620 IPR011766 GO:0003824|GO:0030976
Gma04g01900 651 Pfam Thiamine pyrophosphate enzyme, central domain 271 401 IPR012000 GO:0000287|GO:0030976
Gma04g01900 651 Gene3D - 270 434 - -
Gma04g01900 651 PANTHER ACETOLACTATE SYNTHASE 44 650 - -
Gma04g01900 651 ProSitePatterns Thiamine pyrophosphate enzymes signature. 502 521 IPR000399 GO:0000287|GO:0030976
Gma04g01900 651 MobiDBLite consensus disorder prediction 1 23 - -
Gma04g01900 651 CDD TPP_PYR_POX_like 82 237 - -
Gma04g01900 651 SUPERFAMILY DHS-like NAD/FAD-binding domain 267 433 IPR029035 -
Gma04g01900 651 CDD TPP_AHAS 443 634 IPR039368 GO:0030976
Gma04g01900 651 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 79 242 IPR012001 GO:0030976
Gma04g01900 651 Gene3D - 435 621 - -
Gma04g01900 651 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 442 642 IPR029061 -
Gma04g01900 651 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 79 643 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Gma04g01900 651 Gene3D - 68 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01900 Gma-Chr4 49269521 49271832 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01900 K01652 - gmx:100782250 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01900 04 49269521 49271832 Gma04g01900 04 49269521 49271832 ECH
Gma04g01900 04 49269521 49271832 Gma06g01510 06 14536994 14539351 GST