Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01878 ATGGCACCAACTGTACCTATAGAGTTTGCTGGACAAAAGGAATCCAGAAAGTACTCTCATTCACAGAATATGGGGAAATCTAGAAAATACTCCAAGGGTTATGCTACTGGCTTTGTTCCTGATTTTCGGCATGCTGTTGAGACTATGGGTGAATCAGAAGGGCTAGGTAGCTTGGGAAGGGTTGATACAGAACTGACAGCATTGGCAGATTCTTGTGCACCGAAAGGGAAACGCCCTGGCTTAAATGCAGGTGACGGTGGTTATGGTAGTTTTGATGTACCATTTCAACATTTCTCATTATCAGCGATGTCGGGTTTTGAGAGAAAGGATTTGAAAGTGAGGTTAACTTGGGAACTTGAACAAGTAAGGGAATTTCGGAAGAAAATTGATGGTATGAACTCAAATGTTGTTGGATTGTCTCTCTCCAGTGACATAATGAGCTGCAGTGCAGGGCAGAAGAGGCCTAAGCTGGAGAGCCAGCATAGGACAATGGAAGTATCAGTCCCACATGGTAAGAAAAGGCCCTTACCGGGACATACTGGTCCCAAGTTAAAGAAAAGTATGTCTGGGCATCTTGAATATGCAAAACCTGCTGCACCAGTGACTTCATATGCTACGTTGATGAAATTATGTGAGAATGTACTAAACCGATTGATGTCTCATCAGTTTGGTTGGGTTTTTAACACTCCAGTTGATGTTGTTAAATTGAACATTCCGGATTATTTTACTGTCATCAAGCATCCAATGGATTTGGGTACTGTGAAGAAGAGAATAACCTCTGGCGAATATTCAAATCCCATGGATTTTGCTGCTGATGTGCGGCTGACTTTCGAAAATGCAATGTTTTATAATCCAGCTGGCAATGATGTACACATCATGGCAGAGACCCTTAGTAAATTTTTTGAAACAAGGTGGAAGGCCATAGAGAAGAAAATTCCTGCTATTGATAGTGTCGCATCTGAGCCTTCAAGACCTACTCACGTGGAAACAGAAATTTCTGATCGAGTTCCTCCCACAAAAAAGAAGAAAATAACACCAAATGACACTAATGTCAAGCCAGAGCCTGTTAAAAGAATCATGACTGTAGAAGAGAAGCAAAAGTTGAGTCTAGAGTTGGAGACAATGATTGGAGAGCTGCCTGATAGCATTAGTGATTTCTTGAGGGAGCAAAGTTATAATGAAGGGCAAATCAATGATGATGAAATTGAGATTGACATTGATGCTCTTAGTGATGATACCTTATTCAAACTGCGGAAGCTTCTTGATGATTACATGCTGGAGAAGCAAAAATCCCTGGCAAAAGCTGGACAATGTGAAATGGAGCTTCTGAATGAATCAGGGTTCAGCAATTCATCAATGCAACCTCACAAGGGCGAAGAACAGGTTGAGGAGGATGTTGACATTATTGGTGGGAATGATCCTCCTATTTCAAATTATCCTCCATTAGAGATTGAAAAAGATGTTACCAATAGAAACAGTAAATGCAGTAGCTTGAGCAGCTCTAGTAGTGAATCTGGCTCTTCATCCAGTGATTCAGACTCAGGCAGTTCATCTGGTAGTGAGTTGGATATGGCTAAAACATCAGAACCTCTTAGTGCCACCAAGGAAAACGTAGGATTTGATTTGACTTCAGATCAAAACAAAGGGGATCCTGGTAATTCAGAAACTGGAAAGGATTCAACAAATGTGGGAGGCCAAGTTGAGCAGAGTTCCCAGAGTGGGCATGTTGCTACTGAGCCAGAAAGTCATCAAGACGGGGAGAGTGCTGCATCTAAGAGGCAAGTCTCTCCTGAAAAGCTCTACCGTGCAGCTTTGTTAAGGAGCCGTTTTGCTGACACCATACTTAAAGCTCAAGAGAAAGCCCTTGAAAAGGATGAAAAGCGGGATCCTGAAAAACTTAGGATTGAGCGAGAAGATCTTGAAAGACGGCAGAAAGAAGAGAAAGCTCGGTTGCAAGCGGAGGCAAAGGCTGCAGAAGAGGCTCAGAGGAAAGCTGAAGCAGAAGCTGCGGCTGAAGCCAAAAGGAAAAGGGAACTGGAAAGAGAAGCAGCCCGCCAGGCTTTGCAAAAGATGGAGAAAACTGTTGATATCAATGAGAACAGTCATTTTTTGGAAGATCTAGAGATGCTTAGTGCTGTACATGATGAACATCTGCCAAGTTTCAAAGAGGAGACAAGCGCAGATCAACCTCAAGATGGATTGGGTGGGATCAAGCTACAGGGAAATCCCTTAGAACAGCTAGGGTTGTACATGAaggaggaggaggaggaggaggaagaggaggagCCACCTCCGAGTGGTGCTGCAGGACCATCAAATGATGTGGAAGAAGGAGAGATTGATTGA 2346 0.4237 MAPTVPIEFAGQKESRKYSHSQNMGKSRKYSKGYATGFVPDFRHAVETMGESEGLGSLGRVDTELTALADSCAPKGKRPGLNAGDGGYGSFDVPFQHFSLSAMSGFERKDLKVRLTWELEQVREFRKKIDGMNSNVVGLSLSSDIMSCSAGQKRPKLESQHRTMEVSVPHGKKRPLPGHTGPKLKKSMSGHLEYAKPAAPVTSYATLMKLCENVLNRLMSHQFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKKRITSGEYSNPMDFAADVRLTFENAMFYNPAGNDVHIMAETLSKFFETRWKAIEKKIPAIDSVASEPSRPTHVETEISDRVPPTKKKKITPNDTNVKPEPVKRIMTVEEKQKLSLELETMIGELPDSISDFLREQSYNEGQINDDEIEIDIDALSDDTLFKLRKLLDDYMLEKQKSLAKAGQCEMELLNESGFSNSSMQPHKGEEQVEEDVDIIGGNDPPISNYPPLEIEKDVTNRNSKCSSLSSSSSESGSSSSDSDSGSSSGSELDMAKTSEPLSATKENVGFDLTSDQNKGDPGNSETGKDSTNVGGQVEQSSQSGHVATEPESHQDGESAASKRQVSPEKLYRAALLRSRFADTILKAQEKALEKDEKRDPEKLRIEREDLERRQKEEKARLQAEAKAAEEAQRKAEAEAAAEAKRKRELEREAARQALQKMEKTVDINENSHFLEDLEMLSAVHDEHLPSFKEETSADQPQDGLGGIKLQGNPLEQLGLYMKEEEEEEEEEEPPPSGAAGPSNDVEEGEID 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01878 781 ProSiteProfiles NET domain profile. 350 432 IPR027353 -
Gma04g01878 781 Pfam Bromodomain 211 295 IPR001487 GO:0005515
Gma04g01878 781 MobiDBLite consensus disorder prediction 491 579 - -
Gma04g01878 781 PANTHER TRANSCRIPTION FACTOR GTE10 25 764 - -
Gma04g01878 781 SMART bromo_6 200 310 IPR001487 GO:0005515
Gma04g01878 781 MobiDBLite consensus disorder prediction 1 28 - -
Gma04g01878 781 MobiDBLite consensus disorder prediction 320 352 - -
Gma04g01878 781 MobiDBLite consensus disorder prediction 620 685 - -
Gma04g01878 781 ProSiteProfiles Bromodomain profile. 219 291 IPR001487 GO:0005515
Gma04g01878 781 MobiDBLite consensus disorder prediction 447 597 - -
Gma04g01878 781 CDD Bromo_plant1 207 305 IPR037377 -
Gma04g01878 781 Gene3D - 191 317 IPR036427 GO:0005515
Gma04g01878 781 MobiDBLite consensus disorder prediction 151 187 - -
Gma04g01878 781 MobiDBLite consensus disorder prediction 155 169 - -
Gma04g01878 781 MobiDBLite consensus disorder prediction 327 348 - -
Gma04g01878 781 Coils Coil 637 701 - -
Gma04g01878 781 Pfam Bromodomain extra-terminal - transcription regulation 360 422 IPR027353 -
Gma04g01878 781 Gene3D - 354 431 IPR038336 -
Gma04g01878 781 PANTHER TRANSCRIPTION FACTOR GTE8 25 764 - -
Gma04g01878 781 PRINTS Bromodomain signature 222 235 IPR001487 GO:0005515
Gma04g01878 781 PRINTS Bromodomain signature 238 254 IPR001487 GO:0005515
Gma04g01878 781 PRINTS Bromodomain signature 254 272 IPR001487 GO:0005515
Gma04g01878 781 PRINTS Bromodomain signature 272 291 IPR001487 GO:0005515
Gma04g01878 781 SUPERFAMILY Bromodomain 187 313 IPR036427 GO:0005515
Gma04g01878 781 MobiDBLite consensus disorder prediction 715 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01878 Gma-Chr4 48999925 49003806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01878 - - gmx:100776368 1400.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01533 06 14785597 14789544 Gma04g01878 04 48999925 49003806 ECH
Gma04g01878 04 48999925 49003806 Gma04g01878 04 48999925 49003806 ECH
Gma04g01878 04 48999925 49003806 Gma06g01533 06 14785597 14789544 GST