Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01641 ATGGGGGAGCACGTGGTTTTATCTGTCCTTGACCCTCTTATAGCACCTGGAACTTTGCTACCACAACATGGTGGTGATGGTAATGCTTTAGGTTCACTCATTGAGGGTGCTACTCATGTTAATGATGTTAAGGAATGCGATACACTTGAAGAAGAAAAAGAAGACCTTATCCAAATGGTGGAATGTCGCATTTGCCAGGAGGATGATACCCTTCAAAATTTGGACATACCTTGTGCTTGCAGTGGAACCTTGAAGTTTGCTCATACGAAATGTATTCAACTATGGTGCTACGAGAAGGGTGATACAATTTGTGAAATCTGCAATAAGCCATTCAAACCTGGTTATACTGCAAATTCACCTGTCTGCCAGCCTGGAGATACTTCAATTGGTATCAGTGATGACTGGGCAATCTCTAGTAGTCCTTTAGATTTGCACAATGCTCGACTTTTGGCTATTGCGGCATTGGAGCACCAAGTTCCGGAGACTGAGCATGAAGATTATGTCAATGCTGGCACTGGTGGAACTTCATTGTGGCACTCTGTTGGTCTAATCTTAATGGCTCTTTTACTTCTGAGGCATGCTGCTCCCCTCTTCAATGCTGATGTGGAGAAAGCTTTAACATATTTTTATTTTTTCTTTCTCCGTGCGGCTGCTGTTATCCTTCCTTGCTATCTTATGGCCTGGATGATTCGCATAATACAGCATCAAAGCAATCAGCTGAAGAACTTGCATTTATGCTACAAGCAGAGGAACAGCAAGTTGGCTGATCAGTGGTGCAGCAGAATAAGATCTGATGGCTCTGCTTCTGGTTCTCCATTTGTATCTTTCTCTGGTTATATTTATATTCCCACTCTCTCTCCCCCTCTTTCTGTCTCCTGTAAATAG 885 0.4294 MGEHVVLSVLDPLIAPGTLLPQHGGDGNALGSLIEGATHVNDVKECDTLEEEKEDLIQMVECRICQEDDTLQNLDIPCACSGTLKFAHTKCIQLWCYEKGDTICEICNKPFKPGYTANSPVCQPGDTSIGISDDWAISSSPLDLHNARLLAIAALEHQVPETEHEDYVNAGTGGTSLWHSVGLILMALLLLRHAAPLFNADVEKALTYFYFFFLRAAAVILPCYLMAWMIRIIQHQSNQLKNLHLCYKQRNSKLADQWCSRIRSDGSASGSPFVSFSGYIYIPTLSPPLSVSCK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01641 294 Pfam Protein of unknown function (DUF3675) 113 230 IPR022143 -
Gma04g01641 294 CDD RING_CH-C4HC3_MARCH 62 108 - -
Gma04g01641 294 SUPERFAMILY RING/U-box 60 112 - -
Gma04g01641 294 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Gma04g01641 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 113 IPR013083 -
Gma04g01641 294 PANTHER OS11G0600700 PROTEIN 1 242 - -
Gma04g01641 294 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 242 IPR033275 -
Gma04g01641 294 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Gma04g01641 294 SMART ringv_2 61 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01641 Gma-Chr4 44629161 44632690 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01641 - - gmx:100805050 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01745 06 17718901 17723050 Gma04g01641 04 44629161 44632690 ECH
Gma04g01641 04 44629161 44632690 Gma04g01641 04 44629161 44632690 ECH