Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00909 ATGCTCCATCACCCATTCCTTTACGCTTCCAAAATCGCCACTCAGTCCACACTCTTCCCTCCGGTTTCTTCCGCCGGAAACAGCGCCGGCCGTTCTTCGTTAGCCGGAAATTCGTCCGCCCGTGACGTGAGGTCGTTGAGGTTTATGAAGCAAGCATCGGGAAGCAAATCGAACAATGAACTTGGAGTTTTTAGCGAGACAATGGACCGCGCCAGGCATAGGACAACCACTGTTTATGGTGGTCGTGCTCAAGAAGGGGTTCTTGAGGAAGAAACCTCCAAGGTGATAGAGAGCAGACCATCATGGAAAGTTTTTCCAGGCCAGGCATTTCCATTGGGAGTATCAGAAGTTGACAATTGCATGAATTTTGCTATTTTTTCACAACATGCAACAGCTGTCACACTTTGTTTAGTACTTCCTGAGAGGGGAAGTATTGACGCATTGGATGGTGGCATGATAGAAATGGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCACGTAGCAATGTTCTGTATGGATATCGCATAGATGGACCTGGAGACCGGGGTAAGGGGCATCGATTTGACAGCAGCATTGTGCTTGTTGATCCTTATGCAAAACTAGTCGAAGGTCGAAGATATTTTGGGGATATTAGCTTGAAGTTGTCTAAGTTTCTCGGCACATATGATTTTGACAGCTTGCCTTTCGACTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAAGTGATGAATCTAGTGGTTTGGATAGCAACATTCGTGGCAGCTACCTCGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAGTTGCTGCCTGTCTTTGAGTTTGACGAGTTGGAATTCCAGAGGTTTCCAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCAACAATAAATTTTTTTGCTCCTATGAGTCGTTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCGAGAGTTCAAGCAAATGGTTAAAGCGTTACATTCTGCTGGTATAGAGGTAGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCTTTCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGATGGACAATAATGGGCAATTGTTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAACTAATTCTTGACAGCCTAAGACACTGGGTCACCGAATATCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTTTGTCGAGGAATTGATGGCTCCCCCATTAATGCCCCCCCGCTTATTAGGGCAATTGCTAAAGATGCAGTATTATCAAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTCTGGTGTGAAGGGGAGCTTTGCAACTCGTGTTGCTGGGTCTTCTGATCTTTACAGAGTGAACAACCGTAGGCCATATCATAGTATTAACTTTGTTATTGCACATGACGGATTTACCTTGCGTGATCTTGTTTCATACAATTTCAAGCACAATAAAGCCAATGGGGAAGGTGGAAAAGACGGAAGCAATGATAATTTCAGTTGGAATTGTGGTTTCGAAGGGGAAACTGATGATGCTAGTATAAGAGCTTTGCGATCACGGCAAATGAAAAACTTCCATTTGGCATTAATGATATCTCAGGGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCTATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTGTGGGATCAGTTGGATGCACGGAAGAGCGATCACTTCAGGTTTTTCTCAAAGGTGATAAAGTACCGGCATGCACATGAAGTATTCAGTCGTGAAAATTTTCTCAACACGAACGACATAACATGGCATGAGGACAATTGGGAGAATCCTGACAGCAAATTTCTTGCATTCACGCTTCATGACAGGAGCGGGGGAGATATCTATGTGGCATTTAATTCTCACGATTACTTTGTCAAAGTTCTGCTGCCCACACCTCCAAAAAAGAGAAACTGGTTCCGTGTGGCGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTAGCGTAGGAAACACGTACAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA 2355 0.4285 MLHHPFLYASKIATQSTLFPPVSSAGNSAGRSSLAGNSSARDVRSLRFMKQASGSKSNNELGVFSETMDRARHRTTTVYGGRAQEGVLEEETSKVIESRPSWKVFPGQAFPLGVSEVDNCMNFAIFSQHATAVTLCLVLPERGSIDALDGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPGDRGKGHRFDSSIVLVDPYAKLVEGRRYFGDISLKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTSDESSGLDSNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRFPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASREFKQMVKALHSAGIEVVILDVVYNHTNEADDAFPYTTSFRGIDNKVYYMMDNNGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPINAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGVKGSFATRVAGSSDLYRVNNRRPYHSINFVIAHDGFTLRDLVSYNFKHNKANGEGGKDGSNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSKVIKYRHAHEVFSRENFLNTNDITWHEDNWENPDSKFLAFTLHDRSGGDIYVAFNSHDYFVKVLLPTPPKKRNWFRVADTNLKSPDDFVLDGVPSVGNTYNIAPYSSILLEAKF 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00909 784 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 111 209 IPR004193 GO:0004553|GO:0005975
Gma04g00909 784 Pfam Alpha amylase, catalytic domain 280 401 IPR006047 GO:0005975
Gma04g00909 784 Gene3D Glycosidases 235 690 - -
Gma04g00909 784 CDD E_set_GDE_Isoamylase_N 110 259 IPR044505 -
Gma04g00909 784 PANTHER GLYCOGEN DEBRANCHING ENZYME 77 782 - -
Gma04g00909 784 SUPERFAMILY E set domains 106 243 IPR014756 -
Gma04g00909 784 Gene3D - 691 784 IPR013780 -
Gma04g00909 784 CDD AmyAc_Glg_debranch 239 679 - -
Gma04g00909 784 SUPERFAMILY Glycosyl hydrolase domain 689 783 - -
Gma04g00909 784 Gene3D Immunoglobulins 92 228 IPR013783 -
Gma04g00909 784 SMART aamy 259 667 IPR006047 GO:0005975
Gma04g00909 784 SUPERFAMILY (Trans)glycosidases 238 683 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00909 Gma-Chr4 9135880 9156435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00909 75 783 Glycoside Hydrolase AT4G09020 76.901 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00909 K01214 - gmx:100807545 1615.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00909 04 9135880 9156435 Gma04g00909 04 9135880 9156435 ECH
Gma04g00909 04 9135880 9156435 Gma06g00895 06 8244629 8258765 GST