Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00802 ATGGCGTCTTCTAAGAGGCCAAATGCGGGGCCCAATGGGAGAGGGAAACGCCGGAAATCTTCTGGCGGTTTTTCGCCGTTGGATGTTTCTCCAGGTAGCGTTGTGTTCCGTTTGCTCTGTCATGCTTCTAGAATCGGCAGTGTTATTGGCAAAGGTGGTTCCATCATATCGCAAATTCGCCTAGAAACTGGTGTGAAGGTTAAGATTGAGGAAGCTGTTCCTGGGTGTGATGAAAGGGTTATCACTATCTCGGGTTCGGATAAAGAGGCTGAAGAATATACTGCTGAGCAGGGAAAGGAGGTTAATGATAATGATGATGTTGGAAGCGAGGGGAAAGATGGGGAGGAGAAGAATGGTAGTGATGGCAATGGTAATGAAGATAAAGAAGAAAAAGATGCTGTTCCCGTTGAAGATTCAAAGAGTGAGAAGGGGAATTCGGCTATTTGGAAAGCTATATCCCTAGTTTTCGAGAGGATGGTTGAGGGAGTAGAGGAGACAACTGAAGGGGATGAAGAAAGTAATAAATCTTCTTCCTTTTTTTTGAGGCTGCTTATTCTTACTGCTCAAGTTGGATGCGTTTTAGGAAAGGGTGGTAGTGTGATAAAGAGAATGGCAGCTGAGAGTGGTGCACAGATTCGGATCCTTCCTAAAGACAAGGTTCCAGTGTGTGCATCAGCATTTGATGAGATAGTTCAGATCTCAGGAAGTGTAGAAGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCAACAGCTTTTGGAAAATCCACCTCGGGATCATGAATCCCTGTCCGCCAAGTCTACTGGGCCATCATCTCATTCATTTGGGCAATTCCCACCACACAACCATTCTTTTGCTGCTCAAGGAGAACCTTTTGCTACTGGTCCTCATGATATTTCTGCTTTTCATTCTGCCCCTCCTTTGATTCCCAAGTTTCATGAAGCTGCCATCCACGGTCGCACGAGGCCTTTACAAGAAATGCTTACTTTTCGTTTATTGTGTCCTGTGGAGAGGGTGGGAAATATAATTGGCAAAGGTGGAGCAATCATAAAGACTGTGCAACAAGAGACAGTGAGTGAAATCAAGGTTTTAGAAGCCCCTCCAGATTCAGAGGACTGTGTTATTGTTATATCTGGTCCAGCGCACCCCGAGGATAGAGTATCCCCTGTGCAAGAGGCTGTATTTCGTGTGCAAACTAGAATAGCCAAGCCTATACCCGATGCCAATGACCATACTATGTTAGCAAGGTTTCTTGTTTCTTCCAATCAAATAGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGAAATCAGGGGCCCATATCCGTATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAGGATGAAGAAGTAATTCAGGTGAATGGAGAAATTGAGGCAGTGCATGAGGCTCTTTTGCAAATAACCACTAGATTAAAACATCATTTCTTTCGCGATTCATATCCATCTGTCAATTATCCTTCAAATTCTCCATTTCTGGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGGAGGGGACTTTCACCTCCTGGGATGTATTCTGACCTTGGTCCTCCACCTTCACATGCGGGTTTTCCTCTTGATGATCGCCCTGCTTTTCTGAATAATATACATAGGCCAGGCCTTCCTCCTCACATATCTCAAAGGAAGCCTTGGGGTCCTCTGGGGGTACTTGAAGGTGGCACACCCATTGGCTTGCCAGACTTTCCAAGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGGGGGAGCCAACCAATTATCACAAGCACCACTGTTGAAGTTGTTGTTCCTCGAGCAGTGGTGCCTGTAATATATGGGGAAGATGGTGAATGCCTAAAACAAATACTTCAGATCTCTGATGCAAACATTACTATTACTGATCCAAAGCCTGGAGCTGTGGAAACTAAAATTATAATATCTGGAACCCCAGAGCAAACTCATGCTGCCCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCAGTTTGA 2037 0.4472 MASSKRPNAGPNGRGKRRKSSGGFSPLDVSPGSVVFRLLCHASRIGSVIGKGGSIISQIRLETGVKVKIEEAVPGCDERVITISGSDKEAEEYTAEQGKEVNDNDDVGSEGKDGEEKNGSDGNGNEDKEEKDAVPVEDSKSEKGNSAIWKAISLVFERMVEGVEETTEGDEESNKSSSFFLRLLILTAQVGCVLGKGGSVIKRMAAESGAQIRILPKDKVPVCASAFDEIVQISGSVEVVRKALQSVSQQLLENPPRDHESLSAKSTGPSSHSFGQFPPHNHSFAAQGEPFATGPHDISAFHSAPPLIPKFHEAAIHGRTRPLQEMLTFRLLCPVERVGNIIGKGGAIIKTVQQETVSEIKVLEAPPDSEDCVIVISGPAHPEDRVSPVQEAVFRVQTRIAKPIPDANDHTMLARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHEALLQITTRLKHHFFRDSYPSVNYPSNSPFLDQLPPFPPYLGRRGLSPPGMYSDLGPPPSHAGFPLDDRPAFLNNIHRPGLPPHISQRKPWGPLGVLEGGTPIGLPDFPRGPPRRISGFAGGSQPIITSTTVEVVVPRAVVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00802 678 Gene3D K Homology domain, type 1 602 676 IPR036612 GO:0003723
Gma04g00802 678 MobiDBLite consensus disorder prediction 250 289 - -
Gma04g00802 678 Pfam KH domain 328 380 IPR004088 GO:0003723
Gma04g00802 678 Pfam KH domain 605 668 IPR004088 GO:0003723
Gma04g00802 678 Pfam KH domain 415 480 IPR004088 GO:0003723
Gma04g00802 678 Pfam KH domain 36 90 IPR004088 GO:0003723
Gma04g00802 678 Pfam KH domain 182 247 IPR004088 GO:0003723
Gma04g00802 678 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 325 412 IPR036612 GO:0003723
Gma04g00802 678 ProSiteProfiles Type-1 KH domain profile. 411 480 - -
Gma04g00802 678 CDD PCBP_like_KH 35 86 - -
Gma04g00802 678 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 603 672 IPR036612 GO:0003723
Gma04g00802 678 MobiDBLite consensus disorder prediction 83 139 - -
Gma04g00802 678 ProSiteProfiles Type-1 KH domain profile. 33 98 - -
Gma04g00802 678 MobiDBLite consensus disorder prediction 250 280 - -
Gma04g00802 678 MobiDBLite consensus disorder prediction 1 27 - -
Gma04g00802 678 CDD PCBP_like_KH 415 481 - -
Gma04g00802 678 ProSiteProfiles Type-1 KH domain profile. 603 667 - -
Gma04g00802 678 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 28 89 IPR036612 GO:0003723
Gma04g00802 678 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 170 255 IPR036612 GO:0003723
Gma04g00802 678 CDD KH-I 618 668 - -
Gma04g00802 678 Gene3D K Homology domain, type 1 325 403 IPR036612 GO:0003723
Gma04g00802 678 CDD PCBP_like_KH 328 397 - -
Gma04g00802 678 ProSiteProfiles Type-1 KH domain profile. 178 247 - -
Gma04g00802 678 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 410 493 IPR036612 GO:0003723
Gma04g00802 678 SMART kh_6 602 672 IPR004087 GO:0003676
Gma04g00802 678 SMART kh_6 177 252 IPR004087 GO:0003676
Gma04g00802 678 SMART kh_6 410 485 IPR004087 GO:0003676
Gma04g00802 678 SMART kh_6 325 401 IPR004087 GO:0003676
Gma04g00802 678 SMART kh_6 32 102 IPR004087 GO:0003676
Gma04g00802 678 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 4 539 - -
Gma04g00802 678 ProSiteProfiles Type-1 KH domain profile. 326 393 - -
Gma04g00802 678 Gene3D K Homology domain, type 1 32 97 IPR036612 GO:0003723
Gma04g00802 678 Gene3D K Homology domain, type 1 175 256 IPR036612 GO:0003723
Gma04g00802 678 Gene3D K Homology domain, type 1 409 487 IPR036612 GO:0003723
Gma04g00802 678 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 4 539 - -
Gma04g00802 678 CDD PCBP_like_KH 180 248 - -
Gma04g00802 678 MobiDBLite consensus disorder prediction 83 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00802 Gma-Chr4 7666584 7671610 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00802 K21444 - gmx:100777433 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00802 04 7666584 7671610 Gma04g00802 04 7666584 7671610 ECH
Gma04g00802 04 7666584 7671610 Gma06g00796 06 7232736 7241823 GST