Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00624 ATGGACTTAGAAGGAAGTGAAAAGGGTTCAGTGGTTACTCAGATTAGCATTGGTGGATTTGGCAGTGAGGTCAAAGCAAGTGATCTCCTGAATTACTTGGAGGATAAAATTGGACTTGTGTACAGGTGTAGGTTGAAGACTTCTTGGACCCCTCCAGAGTCATATCCAGAATTTAAAATCATTGATACTGCAAAGATTAGAAGAACGGAAGACTACAAGAAGGTGGAGCCCCATGCCTTTGTGCATTTTGCATCTCCGGAATCTGTGACTGCAGCCCTGAATGCTTCAGGTTGTTGTGATCTATTTTTGAAGAATCAACCGTTAAAGGTCAGCTGTGGGCCCAAAAATCCATACTTCCTGAACCAAAGGAGGAGAACTACAACTCCTTTTAAGATGTCTGATGTACTTGTTGAAATTGGGACTTTGGTTAGTCCAGGGGAGTTTTTCGTTTCTTGGAGAGGACCTGATAAAGGTGTAAAATTTCTTGTGGATCCCTTTGATGGCATGTGCAGGTTTTGTTTCAGTAGAGATACTGCATTCTCATTCAAAGGGATAGACAAAAAAGCAGTTATAAAGTGTGATTTTCAGGTGGGATTCCTGGTTAGAGACATTAATGAGATCAGGAGATATAATGATACATCATATCTCGTTGTTTTATTACACCTAGCTTCTTCGCCTTGGGTTTGGTACAGAACTGCCGATGATGACATTGAAGAATCAGTACCATTTGATTTGCTGGATGATGATGATCCTTGGATCAGAACCACTGATTTTACTCCTAGTGGGGCAATTGGTCGATGCAATTTTTATAGAATTTCAATCCCACCTCGCCATGGTGCGAAATTGATGAAGGCCATGCTTTATCTAAAAGGTCAAAGAGTGCAAATACAAGAACTTCCACTCAAACAGACACTTAGGACACAGAATGAACCTGATTTTGGCATGCCAATGTCAGATGCTTTCTTCTATGTACATTTTCAGAAGGACATTGCTTTTGACATAATGTTTTTGGTCAATGCTATTGTACATAAAGGCATATTCAATCAGCACAGGTTGTCGGATAGGTTTTTTGAATTGCTGAGAAATCAACCTAAGGAGCTTAATGTGGCTGCCCTGAAGCATTTATGTTCGTACAAGCGCCCAGTATTTGATGCAACTAAGAGGCTAAAAATAGTCCAAGAATGGTTGCTCAGAAATCCAAAACTGTATCAGATCTCTAAACAGTTGGATGATATTGTTGAGGTTAGAAGATTGGTTGTTACTCCATCAAAAGCCTATTGTATACCACCTGAAGTTGAATTGTCCAACAGGGTTCTCAGAAAATTCAGAGAAGTTTCAGATTGTTTCTTGAGAGTCACCTTTATGGATGAAGGCATGCAGACAATTAATGTGAATGCTCTTAACTATTATGTTGCTCCTATAGTGAAGGAAATCACATCAAACTCTTTCTCTCAAAAGACAAAAATATATAAAAGGGTGAAAACTATCTTGGAAGAGGGATTTTACTTTTGTGGCCGAAAATATTCATTTTTAGCCTTTTCATCCAATCAACTTAGAGATAGATCTGCTTGGTTTTTTGCTGAGGACAAAATAAGATGTGATGATATACGAAATTGGATGGGCAAGTTTAATCAGAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACAATGCTTCTCATCTACTTATGCAACAGTTGAAGTTGCTGCAAATGAAGTTAACTCCATGCTACCCGATGTTGAGAGGAACAATTACATTTTCTCTGATGGTATTGGTGTTATCACTCATGATCTTGCAAGGGAAGTTGCAGAAAAGTTGAAATTGGACAATGTACCCTCTGCTTACCAGATCAGATATGCTGGTTTTAAAGGGGTCGTGGCCTCTTGGCCGGCTAAAGGGGATGGGGTCAGACTTTCTTTGAGGCCTAGTATGAACAAGTTTCAATCTACTCATAATATCTTGGAGATCTGTGCGTGGACCAGGTTTCAGCCTGGTTTTCTTAATCGGCAGATTATAACATTGCTTTCGGCACTGGGTGTGCCTGATGAAATATTTTGGCAAATGCAGGAGGCAATGCTTTTGAAGTTAAATCAAATGCTTGTGGATGCAGATATCGCTTTTGATGTTCTGACCAAATCATGTGCTGAGCATGGGAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCCTAACAGAACCTCATCTTAGAGGTATGTTAACTTCTACACGTGCTGCGCAGCTTTGGGGACTTAGAGAAAAGTCCAGGATTTTTGTATCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTTGGGTGTGCTTGAACAAGGGCAGTGCTTTGTTCAAGTGTCTACACCTTCTCTTGAAAATTGTTTCTCAAAGCATGGGTCAAGATTTTCAGAGACAAAGAACCTGCATGTAGTTAAAGGTTTTGTGGTTATAGCCAAAAATCCTTGCCTTCATCCAGGAGATGTAAGAGTTTTGGAGGCAGTTGATGCCCCCGATTTACATCATTTAAACGATTGTCTTGTTTTCCCTCAAAAGGGTGACAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTTGATGGGGATCTATATTTTGTCACATGGGATGAAAATCTCATTCCACCAAGTAAGAGGAGCTGGATACCTATGGAGTATGCCCCTCAAGAAAGCAAACTTCTGACACGTCAAGTGATGACCCGAGACATCATAGAATTTTTTGTCAGAAACATGGTAAATGAACATTTGGGTGCAATCTGCAATGCACATGTGGTACATGCTGATTCCAGTGACTATGGTGCCTTGGATGAAAAATGCATACACTTGGCCGAGCTAGCAGCCACTGCTGTCGATTTTCCAAAGACCGGGAAGCTTGTCACTATGCCTCCTCATCTGAAGCCAAAATTGTACCCTGATTTCATGGGGAAAGAGCGGCACCAGTCTTACAGGTCAAATAAAATCCTGGGTAGACTTTACCGGCATATCAAAGATGCTTATGATGAAGATATTGAAGCTCCGTATTTGAACTTTGTGACTGGCGATATACCATATGATAAAGATCTTGAGGTTCCAGGATCTGCTGATTTTATTGCTGATGCGTGGGAGCAAAAATGCTCATATGATGGCCAGTTGAGTGGGCTAATTGGTCAATACAAAGTGAAAAGAGAAGAGGAAGTTGTTACTGGACAGATTTGGTCCATGCCAAAATACAACAGTAGGAAGCAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCTTACAGTGCCCTGAAAAAAGAATTTAGATACACTTTCGAGAAGTTGAATTCGGATGTTGGAGAATTAAGCGAGGAAGAAAAAAATTTGTTGTATGAGCAGAAAGCTTCGGCCTGGTATCAAGTGACATATCATCCTGAATGGGTGAAAAAATCCCTTGATCTGCAAGATAAATCCTCAGAGAACCAAGAGGCTGATAGTTTGGGAAGTACGGTGATGTTGAGTTTTCCTTGGATTGCAGTTGATTACCTAGCTCGCACAAAGATAAGGCAACGACATCAGAGGAGTGGAAATTTTGACTCAACTAAGCCAGTTGATTATCTGGCAAAGTATCTATCTGAAAGGTTTGTTCCCAAGCCAGGGAATTCCTTTGCCTTTGGGGCTTAA 3651 0.4095 MDLEGSEKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKIIDTAKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFLNQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELPLKQTLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVVTPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKIRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAREVAEKLKLDNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDIEAPYLNFVTGDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPEWVKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRSGNFDSTKPVDYLAKYLSERFVPKPGNSFAFGA 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00624 1216 CDD RRM_SF 15 111 - -
Gma04g00624 1216 Pfam RNA dependent RNA polymerase 420 999 IPR007855 GO:0003968
Gma04g00624 1216 PANTHER RNA-DEPENDENT RNA POLYMERASE 9 1203 IPR007855 GO:0003968
Gma04g00624 1216 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 9 1203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00624 Gma-Chr4 5714456 5718620 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00624 K11699 - gmx:100807347 2454.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00624 04 5714456 5718620 Gma04g00624 04 5714456 5718620 ECH
Gma04g00624 04 5714456 5718620 Gma06g00611 06 5536589 5542651 ECH
Gma04g00624 04 5714456 5718620 Gma06g00611 06 5536589 5542651 GST