Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00564 ATGAAGTTTATGAAGCTGGGTTCCAAGCCTGATGCTCTTCAAGCTGATGGAAACTCTATCAGGTATATCTCATCTGAATTGGCTACAGATGTCACCGTTAATGTTGGTGATGTTAAGTTTTACCTTCACAAGTTCCCTCTACTGTCAAAGAGCAACCAACTACAAAAATTGGTATCAAAAGCTAATGAAGAGAATTCTCATGATATTTACTTGGATGATTTCCCTGGAGGGCCAAAGGCCTTTGAAATATGTGCAAAATTCTGTTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTAGCTGCTCGTTGTGCCGCTGAGTACCTTGAGATGACTGAGGATGTTGACAGAGGAAACCTGGTTTTAAAGATTGAGGTGTTTCTTAACTCAAGTATCTTCTGTCGCTGGAAGGATTCTATAATTGTTCTCCAGACTTCTAAATCTCTTCTGCCATGGTCCGAGGATCTGAAGATCGTTGGAAGATGCATAGATTCTATAGCTTCTAAAACTAGTGTAGATCCAGCATACATCACTTGGTCTTACACTTATAATAGGAAATTAACTGAACCTGATAAAATTGTCGAGGACAAGATGACATTTCTAGAGAAAATCGAGTCTGTTCCTGAGGATTGGTGGGTTGAAGACATATGTGAGCTGGACATTGATCTTTACAAACGAGTAATGGTTGCTGTGAAATCAAAGGGGAGAATGGATGGTGTTGTTATTGGGGAGGCACTAAAAACCTATGCATTAAGATGGATACCTGATTCGGTTGATACATTGGTTTCTGATGCCAACACCTTAAGGACCAAAGCCGTGGTACAAACAATTGTCTGTTTATTGTCATATGATCATGGCATTGGTTGTCCGTGTAGTTTCTTGCTGAAGCTATTGAGAGTGGCCATATTAGTCGGAATAAACGAGTCATCAAGAGAGGAATTGATGAAGAGCATTAGCCTCAAATTGGACGAAGCTTGTGTCAAAGATTTACTGATTCCAGCAAGGTCTCTCCAGATTACCACATATGATGTTCATTTGGTACAAGGTATTTTGAATCAATATATGAATCACGAAAAGGGAAGCTGTGGTATGGAGGTTGTTGAGGAGAAACACGGAGGAGAAGATAAATATATTTTAGCACGTAGGTCTTTATTGAATGTCGGCAAGTTGGTGGATGGTTATCTTGGAGAAATTGCACATGATCCTAATCTTGGTCTCTCTAGTTTTGTTGATTTGtcacaatccattcctgattttgctagaccaaatcatgatggtctgtacagagctatagacatctacttgaagGAGCACCCGAATTTGACAAAAGCTGAAAGGAAGAAGCTATGTGGACTGATGGATGTCCGGAAATTGACAGCAGGTGCTTCTGTGCATGCAGCACAGAACGAACGCCTTCCTCTTCGAGTTATAGTGCAGgttctcttctttgatcaggtcagAGTGTGTGCATCAACATCATCCTCTTCCCACTGTAAAGCATGGTTAGTGCAATCCATTCCCACCAATATGCCCCACTTATCCCATGTTCCCGGCACCCTCTCTACTGGGGATGTGCTTCGGTGGCTGGCTGCAAACTCCACCACGAGGCTTCACATTATTGCTCAGTACTGGCAGCTGCTACCTTCTCCTGATGATCCTCGCTCAGGGGACTATGGTTATACTCAGCATCAGATGCATGAATTTGGTGCCGATCAAGGTGTTGCCCTTTATGAAGCATTGGATGCTGCTGCTGACCGTAATGTTAGCATCAGGTTATTGTCCCACTCTGGAGTGTATCCAACTTTTGCCTCAGAACCATCCAAACTTGCTTTTGGAAGGCCTAATGTTGAGAATGTGAGATTGTTACTTGAGAATTGGTGGGGCTCGGGCATTGTCCATGCCAAAGTTTGGATATCTGATAGTAGGAATGTGTATATTGGATCTGCAAACAATGACTGGAAATCTCTTACACAGGTCAAGGAACTGGGAATTTATTTTGCTGATTGTCATGAAATAGCTAAAAAGGTTGAGGTTTACTTTGACAATTTATGGACACTAGCATCGCTTAATTCTTCAGCTTACACAAAAACAGTGTTTGATCAAGACTGGCAAGTTGAGAGAAAGGTTCCTTGCTGGTCGCATTTCATTAATCATGGAGAGAGGTGCATGTCACCTCTCCCTCAATATCTGGAGACTCCTCATATTGCAGGATATCCTATTCTGTCTGAACCTTATATGTTTAAGCTTCCATTTCAAACGCCTGGGAGTAACTATTTAACAAAGCACCTCCAAGGCAGCTATCTATCCTTTGCACCCCCAGAGCTATTATTTGGCAAATATCAGGCTGATGAGCAAGCATGGATTGATACAATTAAGTCTGTTGGAAAGAAGGAAACAGTTAGAATCAGTACCATGGACTGGCTAGGTCAGTCACAATTTATGGACCAAACAATTTACTGGTCATCCCTATCCTCTGCAATATCACAGGTGGTGTTTTCCAAGAATGTAACAGTGCAGATATTGGTGGCATATTGGGCACACTCTATCAACAACACAGATGAGTACCTGAAGTCTCTCCTCTACACCAACAATCTCTGCTCTTCCTCAAAATACAACACATGCTCTGGGAAAGTTGAGATAAAATATTATGTGGTTCCAGGTTTCAACATGACAGGGCCTGCCATCAAGGGTGGAGCTAGAACAGGAAACATATACCCTGATTTTACAAGAGTCAATCATGGAAAATATGCAGTTAGTGATGTAAGGGCACACATTGGGACTAGCAATCTTGTATGGGACTACTTCTTCACAACAGCAGGTGTCAGCTTTGGGACATACAACACTGCCATCATCTCTCAACTCAGGGAAATTTTTAATGCTGATTGGAACTCACCCTATGCTGTTCCATTTGAAGAGTTTGAGAAAGGTCATACAAGAAGTTCAATCTAA 2952 0.4041 MKFMKLGSKPDALQADGNSIRYISSELATDVTVNVGDVKFYLHKFPLLSKSNQLQKLVSKANEENSHDIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDVDRGNLVLKIEVFLNSSIFCRWKDSIIVLQTSKSLLPWSEDLKIVGRCIDSIASKTSVDPAYITWSYTYNRKLTEPDKIVEDKMTFLEKIESVPEDWWVEDICELDIDLYKRVMVAVKSKGRMDGVVIGEALKTYALRWIPDSVDTLVSDANTLRTKAVVQTIVCLLSYDHGIGCPCSFLLKLLRVAILVGINESSREELMKSISLKLDEACVKDLLIPARSLQITTYDVHLVQGILNQYMNHEKGSCGMEVVEEKHGGEDKYILARRSLLNVGKLVDGYLGEIAHDPNLGLSSFVDLSQSIPDFARPNHDGLYRAIDIYLKEHPNLTKAERKKLCGLMDVRKLTAGASVHAAQNERLPLRVIVQVLFFDQVRVCASTSSSSHCKAWLVQSIPTNMPHLSHVPGTLSTGDVLRWLAANSTTRLHIIAQYWQLLPSPDDPRSGDYGYTQHQMHEFGADQGVALYEALDAAADRNVSIRLLSHSGVYPTFASEPSKLAFGRPNVENVRLLLENWWGSGIVHAKVWISDSRNVYIGSANNDWKSLTQVKELGIYFADCHEIAKKVEVYFDNLWTLASLNSSAYTKTVFDQDWQVERKVPCWSHFINHGERCMSPLPQYLETPHIAGYPILSEPYMFKLPFQTPGSNYLTKHLQGSYLSFAPPELLFGKYQADEQAWIDTIKSVGKKETVRISTMDWLGQSQFMDQTIYWSSLSSAISQVVFSKNVTVQILVAYWAHSINNTDEYLKSLLYTNNLCSSSKYNTCSGKVEIKYYVVPGFNMTGPAIKGGARTGNIYPDFTRVNHGKYAVSDVRAHIGTSNLVWDYFFTTAGVSFGTYNTAIISQLREIFNADWNSPYAVPFEEFEKGHTRSSI 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00564 983 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 909 935 IPR001736 GO:0003824
Gma04g00564 983 Gene3D Potassium Channel Kv1.1; Chain A 4 125 IPR011333 -
Gma04g00564 983 Pfam PLD-like domain 576 685 IPR025202 -
Gma04g00564 983 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Gma04g00564 983 Gene3D Endonuclease Chain A 772 966 - -
Gma04g00564 983 PANTHER OS12G0117600 PROTEIN 4 499 IPR043454 -
Gma04g00564 983 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 629 656 IPR001736 GO:0003824
Gma04g00564 983 Gene3D Endonuclease Chain A 522 689 - -
Gma04g00564 983 SUPERFAMILY Phospholipase D/nuclease 527 687 - -
Gma04g00564 983 CDD BTB_POZ_NPY3-like 21 124 - -
Gma04g00564 983 SMART pld_4 629 656 IPR001736 GO:0003824
Gma04g00564 983 SMART pld_4 909 935 IPR001736 GO:0003824
Gma04g00564 983 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 499 IPR029961 GO:0060918|GO:0099402
Gma04g00564 983 SUPERFAMILY Phospholipase D/nuclease 751 978 - -
Gma04g00564 983 SMART BTB_4 29 127 IPR000210 GO:0005515
Gma04g00564 983 SUPERFAMILY POZ domain 22 116 IPR011333 -
Gma04g00564 983 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Gma04g00564 983 CDD PLDc_vPLD3_4_5_like_1 503 670 - -
Gma04g00564 983 CDD PLDc_vPLD3_4_5_like_2 768 964 - -
Gma04g00564 983 Pfam BTB/POZ domain 26 115 IPR000210 GO:0005515
Gma04g00564 983 Pfam NPH3 family 211 463 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00564 Gma-Chr4 5046115 5055340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00564 22 489 EF-hand Containing Proteins AT3G44820 33.669 8.82e-86 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00564 K16860 - gmx:100815396 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00564 04 5046115 5055340 Gma04g00564 04 5046115 5055340 ECH
Gma04g00564 04 5046115 5055340 Gma06g00551 06 4864119 4872939 GST