Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00501 ATGAAGAAGACGAAGAAGAGTGGCGAAGAAAATGGGGGCAAGCTCAAGTTCAAGGGCGCGGAGAGGTCAGCTTACTTCGCACGCAGAGAGGCAGCGAAGGTTTTGAAAGTGATTCTCGAAGGAGACGCCAAACGCCGCGCTCTAGCCTCCATCAAATCCCTCATTTATCAACCTTCCGTTAGAAACAAGAAGGCCACATTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATTATCAAGGATGTCTTGGAAGCTGCTTCTATTCTCAACACCAAGTGGAAGAGGCAACGAGAATTGATTTATATCATTGTCTATGATATCCTTTTAGGCCAGGCGGTTTCACTAGTTGGTGATGCTGAGAAGTACCTTATGCGCCACCAAGATGCCCTGCGTTCAACCCTCAAACAGCTTTTGTTACAGAGAAATGTCAAGACAGTTAAACAGTTGATTGCTCTGCATCAAGTTCCTGATATTTCTGTACCTCGATATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATAATTTACTGCCTGATTTGCTGATACTCCCACCAGGAACAGATTTACATGATCATCCTCTTGTCAAGAATGGCAGTATCTTTCTGCAAGGTAAGGCAAGTTCCATGGCAGCACCAGCCCTTAGCCCTGAACCAGGCTGGGAGGTTCTTGATGCATGTGCAGCACCAGGAAACAAAACTGTTCACCTTGCTGCCCTTATGAAGAGAAAGGGTAAGATTATTGCATGTGAGCTACAAAAAGAAAGGATTAAACGTTTGAAAGACACTATAAAGCTATCTGGTGCTTCTAACATACAAGTCCTCAATGATGATTTCTTGAACCTAAATCCCAAGGATCCTTCATACTCCAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGGACTGCTGCTTCAAGACTAGATCATCTACTCCCATCTAAAGCAGCAGGTCAGGATGCTGATATGGAAAGATTGAACAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTGTTGAAAGAATTGTTTATAGTACATGTTCAATCAACCAAATTGAGAATGAAGATGTCATCAAATCTGTTCTGCCCATAGCCGAATCAAATGGATTTCAGTTGGCAAAGCCATTCCCTGGGTGGGAATGCCGTGGTCTTCCAGTGTTTGAAGGCTCTGAATGCTTGGTTCGGACAGATCCTGCTAAACATGGCGAGGGTTTCTTCATTGCTTTGTTTACTAGGAAAGATGCTAACTTTTCAGGGCGATCAAATAAAAATGAAACTAGAATTTCCGACAGCACTGCCGAAATTAAAAACGCGCGAAGAAAGAAGAAACGTGTACCGTTTGTTAGCACAAACCCATTCAAAACGTGGTTATATGATAGTAAAATTGTTAAGTCTTGGCGGTCGAATTGA 1485 0.429 MKKTKKSGEENGGKLKFKGAERSAYFARREAAKVLKVILEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLKHLPIIKDVLEAASILNTKWKRQRELIYIIVYDILLGQAVSLVGDAEKYLMRHQDALRSTLKQLLLQRNVKTVKQLIALHQVPDISVPRYVRVNTLKLDVDSALLELQKKYSVQKDNLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGKIIACELQKERIKRLKDTIKLSGASNIQVLNDDFLNLNPKDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQDADMERLNKLATFQRKALQHALLFPAVERIVYSTCSINQIENEDVIKSVLPIAESNGFQLAKPFPGWECRGLPVFEGSECLVRTDPAKHGEGFFIALFTRKDANFSGRSNKNETRISDSTAEIKNARRKKKRVPFVSTNPFKTWLYDSKIVKSWRSN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00501 494 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 153 438 IPR001678 GO:0008168
Gma04g00501 494 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 162 438 IPR029063 -
Gma04g00501 494 Gene3D Vaccinia Virus protein VP39 219 444 IPR029063 -
Gma04g00501 494 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 19 468 IPR023267 GO:0001510
Gma04g00501 494 CDD AdoMet_MTases 238 326 - -
Gma04g00501 494 PRINTS RNA (C5-cytosine) methyltransferase signature 210 224 IPR023267 GO:0001510
Gma04g00501 494 PRINTS RNA (C5-cytosine) methyltransferase signature 239 249 IPR023267 GO:0001510
Gma04g00501 494 PRINTS RNA (C5-cytosine) methyltransferase signature 308 320 IPR023267 GO:0001510
Gma04g00501 494 PRINTS RNA (C5-cytosine) methyltransferase signature 364 380 IPR023267 GO:0001510
Gma04g00501 494 PRINTS RNA (C5-cytosine) methyltransferase signature 420 437 IPR023267 GO:0001510
Gma04g00501 494 Pfam 16S rRNA methyltransferase RsmB/F 229 435 IPR001678 GO:0008168
Gma04g00501 494 Gene3D Sun protein; domain 3 154 218 - -
Gma04g00501 494 PANTHER BNAA09G04380D PROTEIN 19 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00501 Gma-Chr4 4482043 4487202 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00501 K15264 - gmx:100775620 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00501 04 4482043 4487202 Gma04g00501 04 4482043 4487202 ECH
Gma04g00501 04 4482043 4487202 Gma06g00491 06 4194232 4199226 GST