Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00421 ATGTCGAATCGATCTAGTCAGGGTAGACAACATGACAACAATAACAACAAGGGTTTCGCCAAAACCCATAATCAGAAGAAATTCGTCCCCAAAAACCAAAGTCAAAATCCCAATCCTAACCCAACTCCAACCCTCTCAACCTCCCTCAGACAAACACAACCAAACAGAGGGCAGAAGGGGAATTTCGTTAAATACTTGCCGCAAGACGAAGCTGTGGCAGCGGGTCTCGGCGCCGAAGATGGAGCATTGGATCCCCTCGAATCTCAGAGAGTCGTAGATCTTTTGAACACACAGCTATCTCGCTTGCTCAAGTTGAAACCCAAGCAATTCTGGACACAAGTGGCTACTGACACCTCCCTGCATGAGCTTTTGGACAGCTTCTTGCAGTTCAGGAGCAGGTGGTATGATTTCCCTCATCGCGGGGTGCAAGGGATTGTTGCCGGTGTTATTGTTGGGGAGCTCGAGTTGAGTCGCCGCGTTTTCATGGTATTGTATCGCATTTCTTCGAATAAAGACCCCGGTGCACGACCTGTGGATGCTCTCAGTTTGAGAGACCATGAAGTTCTTTTGCAGGAGAAGAAGTTGCTTGAATTGCCGAAGTTGTTGGATATATGTGCCATATACCATCATGAAAATGAAGAACTGACAAGATCACTGGTTAGAAATTCTTTGAATGCTCAGCCTTGGATCCATAATAATCTGACTGCAGTAATATCCCATTTTCTAGGAATTGTCAGCACAATGCATGAACGTTGTAGTTCATCATTGGAGGTCTTGTTTTCTTCTGGAAACTTCGATCACCATAATGCTGCTTTTCTTCAAGCTGATCTGCTGGAGGTAATGGACTTTATAAATGATGCAATTGTATCAATGGACTCTTTTGTTAGTGTATACGAACCAGCAGCTGTTTTCTTCTCTTGCCCAGTAGAAATGAGTTATGGGAATGAGGAACTGCTGAGCCTCCTTGCCAGATTGCATGATTCACTAATTCCATCATTGCAAAAGGGATTCCGTGTGATTTTTGCTGACAAACAAGATGATACAGTATCTAATGTCTTAGTAAGTTTGAAGATGTTAAAAATTAGATTGGTGAAGTTTGGTTGGCAACTATTGCACTTGTGCTATCTAAGTGATGAAGTGTTCAGAGATAGCATCCCTCTTCCAGCTGCCACAAAGATGTTTCCTGCCAATGTAGAGGACCCAGTCATCAGAGCAGATATTCTGGTTCAAACATTTAGAGAGATCAATTCGATATCATTACATTCTCAGGAAAGCCATCTGAAGGAAACATTTCTTCAAGATGTTGAAAGAAATTTCAATATACTAAGCAGGATTGAGAGATTAAGGGATGGTGGATGGATATTCATTGATGATGAACAGTTTCAATATATATCTGGGATGTTGAGTTCTGTTTATAAGGAGCCGTATTCTGCCTCAACCCCTGCGCCAAACCAAACATTGCTGATGGATGAAGATGCTGCAATTTCAGAGTCAAACATCAGTCAGATTAGGGACCTGTTCCCTGATTATGGTAAAGGTTTTTTAGCTGCGTGTCTTGAGGTCTATGACCAGAATCCAGAAGAGGTTATTCAAAGAATTTTAGAGGGAACCCTTCATGAAGATCTGCAGAACATGGACACCTCACTAGAGACATTGCCACCAGCCAAGTCTACCACTGTGGGTGGGAATGATAAAGGAAAAGGTAAGTTAATTGATTCTACGCCAGCATCCTCAAATCCAGAAGTTGTTAGGGGGAAGCAACAGGCAGAGGGCCCAGTGATGTCATCCTCTGCTTCACTGGGAAAATTTGTGAGGAAATCTAGAGCTGACTTGCCTGATCGCAGTATTCTGGATAAAAAGGATGAAAAAGATACATCAAGAACTGCTGCTATGATTTTACAATATGAATATGAAGATGAGTATGATGACTCTTTTGATGACTTGGGTCTAAGTGTAGCAGATTCTGGAGTAGAAGAAAATGAGACACTGGGTGACCAAATAAACGCAAAGTCAGGGAATTCGTGGGCAACAGGGAGTGGAAACTCTGTCAAAAATGCCCCTGATTCAAAATGGGGCTCCAGGAAAAAGCCGCAGTACTATGTCAAGGATGGTAAGAACTACAGCTACAAAGTGGCTGGTGCAGTAGCAGTGGCAAATTCTGATGAAGCTTCGTTAATAACGCAAGCTCAGAAAGAATTGATACATGGCCTTGGACGTGGTGGCAACCTTCCTCTTGACGCGGTAAAGAAAGTGACTGATTCCTACAAGGAGGATGATAACCAATCCCAGGTTTCTGAAATGGAAGGGAGAGGGATTTCGGGCAATTCGTTTGGTAGGGGAAGGAAGGAAGGTGGAAAACAAGTTTCATCTCATCAGCAACAGGAGAAACAATCCGATGATTCCGAGGTGGATAGCAATAATCAAAGGGGGagagggagaggaagagggaggggaaggggaggaggaagaAACAATCATTACCAGAAGGACCGAGCCATGAAGAAGCATTTCTCTGGAATGAGTGGTTATTAA 2532 0.4242 MSNRSSQGRQHDNNNNKGFAKTHNQKKFVPKNQSQNPNPNPTPTLSTSLRQTQPNRGQKGNFVKYLPQDEAVAAGLGAEDGALDPLESQRVVDLLNTQLSRLLKLKPKQFWTQVATDTSLHELLDSFLQFRSRWYDFPHRGVQGIVAGVIVGELELSRRVFMVLYRISSNKDPGARPVDALSLRDHEVLLQEKKLLELPKLLDICAIYHHENEELTRSLVRNSLNAQPWIHNNLTAVISHFLGIVSTMHERCSSSLEVLFSSGNFDHHNAAFLQADLLEVMDFINDAIVSMDSFVSVYEPAAVFFSCPVEMSYGNEELLSLLARLHDSLIPSLQKGFRVIFADKQDDTVSNVLVSLKMLKIRLVKFGWQLLHLCYLSDEVFRDSIPLPAATKMFPANVEDPVIRADILVQTFREINSISLHSQESHLKETFLQDVERNFNILSRIERLRDGGWIFIDDEQFQYISGMLSSVYKEPYSASTPAPNQTLLMDEDAAISESNISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEGTLHEDLQNMDTSLETLPPAKSTTVGGNDKGKGKLIDSTPASSNPEVVRGKQQAEGPVMSSSASLGKFVRKSRADLPDRSILDKKDEKDTSRTAAMILQYEYEDEYDDSFDDLGLSVADSGVEENETLGDQINAKSGNSWATGSGNSVKNAPDSKWGSRKKPQYYVKDGKNYSYKVAGAVAVANSDEASLITQAQKELIHGLGRGGNLPLDAVKKVTDSYKEDDNQSQVSEMEGRGISGNSFGRGRKEGGKQVSSHQQQEKQSDDSEVDSNNQRGRGRGRGRGRGGGRNNHYQKDRAMKKHFSGMSGY 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00421 843 Pfam CUE domain 497 537 IPR003892 GO:0043130
Gma04g00421 843 MobiDBLite consensus disorder prediction 667 693 - -
Gma04g00421 843 MobiDBLite consensus disorder prediction 667 688 - -
Gma04g00421 843 ProSiteProfiles CUE domain profile. 495 538 IPR003892 GO:0043130
Gma04g00421 843 CDD CUE_ASCC2 497 536 IPR041800 -
Gma04g00421 843 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 13 842 - -
Gma04g00421 843 SUPERFAMILY UBA-like 497 552 IPR009060 GO:0005515
Gma04g00421 843 MobiDBLite consensus disorder prediction 754 843 - -
Gma04g00421 843 Gene3D - 496 538 - -
Gma04g00421 843 MobiDBLite consensus disorder prediction 572 595 - -
Gma04g00421 843 MobiDBLite consensus disorder prediction 784 811 - -
Gma04g00421 843 MobiDBLite consensus disorder prediction 1 59 - -
Gma04g00421 843 MobiDBLite consensus disorder prediction 549 599 - -
Gma04g00421 843 SMART cue_7 495 537 IPR003892 GO:0043130
Gma04g00421 843 MobiDBLite consensus disorder prediction 1 61 - -
Gma04g00421 843 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 13 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00421 Gma-Chr4 3651849 3659491 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00421 K18667 - gmx:100778129 1579.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00421 04 3651849 3659491 Gma04g00421 04 3651849 3659491 ECH
Gma04g00421 04 3651849 3659491 Gma06g00410 06 3528946 3536699 GST