Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00342 ATGACACCTCTTTCACCCATGATGACAATGAGCTCGTCCTCTACTACGCCAACCCCTGCGCCCTTCTCACAACGTCATACTACTACCTTCCATCTCCTTCCTTTGCACATCGCCATTGAAGGAAAGCTCCTTTACATGTCATCATCTATGGGTTTGGATGGGTTTCTGGTATGTGAAGGGACATCTATTGTGGAACAAGAATTCCAAAACGGTCATTCTAGAAGTAAAATTTTGTCTTGCAAAAAAGGATACAATATGGGAGGTGTAGGAAGGAAATGTTGGGGTACAATCCAAATCGGCCCGTGCGCTGCCCAATTGATACGCGTGTCCTCTCGGGCAGACTCAGTGGTGCGAGGTGTTCTACGAATGCTGCAAGGGTTTTCTGGTCCCCCATTCTTTTGGGATAAAAATGCAAACATTTTCCGTGCAAAGAGCGGAGTGTACGTTAGTCATCTCTCACAGAAAAGTCTTCACTCTCTGCTCAATCAGTTTATCCACGCAGCCACGTGTCTCCAATTGGTGGCTATTACACTCAACAAAGTCGAAACCGCAGTGCCAAAATCTCCTCCTACTTTGAACGCATTTGTGTGCCTCAAGGGGTTGCGGAATATTGCCTTGAAGGAGGAAACGTCCACCAGCAATGCAGATTGTGTAACCACCCCAACCTTGTTAGGATTGGCTAATTCCTTATCGAGTCTTTGCTCAGGCGCTGAGTTCCTATTTGGAGTGGTGCATGAGGCTATTCCTGCTGTATACTTTGAGTTTGGTCTGTCTGTACCGGCAGCAGAACTCACAGTTCATGTGCTTGACTACCTTCATAAGAAGCTTGACGAAGTGTGTCTTGTACAAGGTGGTGAGGTCGAAGCTTATCAGATGGTGCTTTATATGTATGTTGGAAGCTTGTTGCCATACATTGAGGGTCTTGATTCCTGGCTTTTTGAAGGAATTCTTGATGATCCTTTTGGTGAGATGTCCTTTTTTACTGATAAAGAAGTCTCAGTTGATGAGGCTGAGTTCTGGGAGAAGAGTTATTTGTTAAGAAGGCTACAGCATAGCAAATTAGATTCAGAATTCTTCTCTTCCACGAATTATGTCAATGATCCTGTGCCAGCATCAAATGACAAGGAAATGGATAGGAGAATTCCATCTCTTTGTCTAGTACAAATGGCTGGGTTAACGTTGCCCGAAGGTTTTTCTGTATCACTAGTTGGATTTGTTGGTCATGGCGACCATGTTTGTAAGTACTTTTGGCAAAACAACTGGTATGAATCTGTATCTTTTTCTTCCAATGTATCTCATGTAAATGAGGAAAAACCAGATAATGACAATAATGAAAAATTAATTGCTCCACCTTACTCAAAAAAGACATGGTATAAAGAGCTGAGAGGGGCTAGAGCTATTGATGACGAAGTGCTTCTCTTGAGGTCATACATAGAAAATCAAGTTATTACTGGTTTAAGAAAGGCTATATTTGGTGGAGAAAATGCTGCATTTTCTGATAGTGAAGGAATGAACTATACTTTTGGCTTTCACTTTGGTGAATCTGAATACCTTCGCTCACAGGATGACAGAAAGCTGTTAGAAATGTTGTTTCCTTTTCCCACTATATTGCCTTTGTTTCAGGATGATCTTCCCGTGTCAGAGCTCTTGCCTTTTCAGAGAAACAGCAGTCTTATTTCAAGAGTTCTTCATTGGATGCAAAATGTTGACCTAAGAACTACTCCACTTCCTCTGGTTATTATGCAGTACTGCCTAACCGTCTACATTCAGAAGCAGAGAACAGGTGTTGATATTTTGTCTTGTGCAGGTGATTTGCTGCAACACTTTTTGACTGTAATTTTCAACAAGTTGGATAAGGGTGAAGCATGGGATGATGATTTTGAGTTAAACACAACATTACAGGAATCAATCAGAAATTCTGCTGATTGTATGCTGTTAAGTGCTCCAGACTCATTGGTAGTGTCGATAACCAAAAATCATGTTGACAGTGATGAGGAAGCTAGCACAGCTGGTGTTGTTTTGAGTACGCCTCCTCAAAGTCATGTCAATAGCTTTGGAATTAATGGCCTTGATATGCTCAAATTCACGTATAGGGTTCCTTGGCCTCTTGAACTCATTGCAAATACTGAGGCAATTAAGAAGTACAACCAGGTGATGCGGTTCTTGTTGAAGGTCAAGCGTGCAAAATTTGTATTAGATAAAGTGCGGAGATGGAAGTGGAAGGGTAAGGGATCTGCTACAAACAACAGAAAGCATCATTGGTTAGTGGAGCAGAAACTCCTTCATTTTGTGGATGCTTTTCACCAATATGTTATGGATCGGCATTTTTATCTGTTACTACAATTTCTATGGCGGGAACTATGCGAAGGTATGACTGCAGCAAAATCTCTGGATGAAGTCATTGAAGTCCATGAGGCTTACATCTTATCAATTCAGCGGCAATGCTTTGTGGTTCCTGATAAGCTGGGGGCTCTTATTGCCAGCCGCATCAACAGCATCCTTGGCATAGCTTTAGATTTTTATAACATACAACAGACATTAGGTAGCGGTGGAGCTGTTTCTGCAATCAAAGCAAGGTGTGAGATGGAAGTGGACCGGATAGACAACAGTTTGATGATTGCATTGCTTTCTTACTAA 2637 0.4198 MTPLSPMMTMSSSSTTPTPAPFSQRHTTTFHLLPLHIAIEGKLLYMSSSMGLDGFLVCEGTSIVEQEFQNGHSRSKILSCKKGYNMGGVGRKCWGTIQIGPCAAQLIRVSSRADSVVRGVLRMLQGFSGPPFFWDKNANIFRAKSGVYVSHLSQKSLHSLLNQFIHAATCLQLVAITLNKVETAVPKSPPTLNAFVCLKGLRNIALKEETSTSNADCVTTPTLLGLANSLSSLCSGAEFLFGVVHEAIPAVYFEFGLSVPAAELTVHVLDYLHKKLDEVCLVQGGEVEAYQMVLYMYVGSLLPYIEGLDSWLFEGILDDPFGEMSFFTDKEVSVDEAEFWEKSYLLRRLQHSKLDSEFFSSTNYVNDPVPASNDKEMDRRIPSLCLVQMAGLTLPEGFSVSLVGFVGHGDHVCKYFWQNNWYESVSFSSNVSHVNEEKPDNDNNEKLIAPPYSKKTWYKELRGARAIDDEVLLLRSYIENQVITGLRKAIFGGENAAFSDSEGMNYTFGFHFGESEYLRSQDDRKLLEMLFPFPTILPLFQDDLPVSELLPFQRNSSLISRVLHWMQNVDLRTTPLPLVIMQYCLTVYIQKQRTGVDILSCAGDLLQHFLTVIFNKLDKGEAWDDDFELNTTLQESIRNSADCMLLSAPDSLVVSITKNHVDSDEEASTAGVVLSTPPQSHVNSFGINGLDMLKFTYRVPWPLELIANTEAIKKYNQVMRFLLKVKRAKFVLDKVRRWKWKGKGSATNNRKHHWLVEQKLLHFVDAFHQYVMDRHFYLLLQFLWRELCEGMTAAKSLDEVIEVHEAYILSIQRQCFVVPDKLGALIASRINSILGIALDFYNIQQTLGSGGAVSAIKARCEMEVDRIDNSLMIALLSY 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00342 878 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 106 361 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Gma04g00342 878 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 485 869 - -
Gma04g00342 878 Gene3D - 598 876 IPR042241 -
Gma04g00342 878 Pfam Gamma tubulin complex component C-terminal 599 868 IPR040457 GO:0043015
Gma04g00342 878 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 485 869 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Gma04g00342 878 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 106 361 - -
Gma04g00342 878 MobiDBLite consensus disorder prediction 1 23 - -
Gma04g00342 878 Pfam Gamma tubulin complex component N-terminal 117 348 IPR041470 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00342 Gma-Chr4 2923660 2930454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00342 92 634 Glycosyltransferase AT1G20570 39.332 1.15e-122 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00342 K16572 - gmx:100782299 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00342 04 2923660 2930454 Gma04g00342 04 2923660 2930454 ECH
Gma04g00342 04 2923660 2930454 Gma06g00329 06 2852464 2861559 GST