Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00197 ATGCTATCGTTTCACTCATGTGGATGTTGCCGCGTTTCCGCTTCCCGAGCATTCCAATTTCAATTTCAAACCGCACCTTCTCCTTCACTCTTTCTCTCAGCTACGAGCTATAAATTTCGTTCTGCCACCGCGAGCGCCGCTTCTGGTTCCGCCGGCGACTCAGACTCCGATGGAGAGCCAAAATTGAACTTCTCGGGTGTGCGGTTGGAGGAGGCAGTCGATAGCAGAATCGGATCTGGAAAACTCAGACTCGACAACTGGATCTCTTCCCGCATCAATGGCATTAGCAGGGCACGAGTTCAATCAAGTATCAAATCAGGACTCGTTCATGTCAATGGCCGTGTCGTTGATAAGGTTTCTTTCAATGTCAAATCTGGGGATGAGATCAAGTGCACAATCGCAGAATTGCAGAATTTGAGGGCCGTGCCACAAAATATACCTTTGGATATCGTTTATGAAGATGAGCATGTTCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCGGCACCTGGCAATACATCTGGAACGCTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATGTTGAATTTTCTAAAGACGAAGCTCTTTCAGATACAGAAGATTCTGATGATGAGTTCAATAGTTATATCTCCCTGGCAAGTTCTTGTGAGGGGTTAAATTCTAGACTGTCTGTGGCATCAAATTCAATTCGCCCAGGGATTGTACACAGATTGGACAAAGGCACGAGTGGGTTACTTGTTGTTGCAAAGGATGAACATTCACACATGAAATTGTCAGAGCAATTCAAGCAACGAACCATTAAGAGGCTTTATGTCAGTCTTACTGCTGGGGTACCCACTCCAGTTGCTGGGCGTGTTGAGGTTCCAGTTGGCCGTGATACTAATAACCGGATTCGTATGACTGCTGTAACTGGACCAGTTAATTCTAAAAAGGCCCGTTATGCTGCTAGTAGGTACAAAGTAATTGAGATACTTGCTGGGGGGAGTTGTTCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATTCGCGCACATGCTAAGTATTTGGGAGTTCCCCTACTGGGTGATGAGTTGTATGGAGGGACAAAAAGCATGGTCTTGTCACTGCTAAGGCCCCGAACTCCCATCAGTTTGCATAGCAAAATCGTAAAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTGGACTCTCGGGTTTCAGCATCCCCATACAGGGGAGCAGGTGCATTTTTCATGCGAACCCCCTGCAGACTTCGCTGAGATTTTGAGCCAGCTTCGTAGAATTGGTAGTGAGACGGTTTCTTTCACAAAGCGTTCAAATTCATGA 1353 0.4612 MLSFHSCGCCRVSASRAFQFQFQTAPSPSLFLSATSYKFRSATASAASGSAGDSDSDGEPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDKVSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDEFNSYISLASSCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKARYAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRIGSETVSFTKRSNS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00197 450 ProSiteProfiles S4 RNA-binding domain profile. 82 155 - -
Gma04g00197 450 Gene3D - 76 138 IPR036986 GO:0003723
Gma04g00197 450 Gene3D Pseudouridine synthase 206 438 - -
Gma04g00197 450 Gene3D Pseudouridine synthase 149 198 - -
Gma04g00197 450 CDD PseudoU_synth_RluA_like 157 408 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma04g00197 450 SUPERFAMILY Pseudouridine synthase 142 435 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma04g00197 450 Pfam S4 domain 83 129 IPR002942 GO:0003723
Gma04g00197 450 SMART s4_6 82 147 IPR002942 GO:0003723
Gma04g00197 450 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 81 436 - -
Gma04g00197 450 SUPERFAMILY Alpha-L RNA-binding motif 81 169 - -
Gma04g00197 450 Pfam RNA pseudouridylate synthase 156 353 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gma04g00197 450 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 81 436 - -
Gma04g00197 450 CDD S4 83 161 - -
Gma04g00197 450 ProSitePatterns Rlu family of pseudouridine synthase signature. 239 253 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00197 Gma-Chr4 1677992 1682746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00197 K06180 - gmx:100810383 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00197 04 1677992 1682746 Gma04g00197 04 1677992 1682746 ECH
Gma04g00197 04 1677992 1682746 Gma06g00186 06 1622145 1623687 GST