Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00172 ATGCAAGCTGCATCTTCAGGCATCGGATACGGTCTAAAATATCAGGCTAGATGCATATCCGATGTGAAGGCAGACACAGATCACACTAGCTTCCTCGCTGGCACTCTCAGCCTCAAAGAAGAAAATGAGGTACATCTGATTCGGCTTTCGTCGAGTGGAACCGAACTCTTCTGCGAGGGATTGTTCTCTCATCCCAACGAGATCTGGGACCTTGTTTCTTGCCCCTTTGATCAACGGATCTTTTCAACCGTCTACTCTAACGGTGAAACGTATGGGGCAGCAATATGGCAGATCCCCGAGCTATATGGCGAGTTAAATTCACCTCAGCTAGAGAGAATTACCTCCCTCGACACTGATTCTGGCAAGATTAAATGTATTCTATGGTGGCCATCTGGAAGGCATGATAAATTGATCAGCATCAATGAGGAAAACCTGTACTTGTGGAATTTAGATGTTTCAAAGAAAACTGCTCAGGTACAATCACAAGATTCAGCTGGTATGCTGCACAAGTTATCTGGAGGGGCATGGGATCCACATGATGTGAGTTCTGTTGCTGCAACTTGTGAATCGTATCTCCAATTTTGGGATGTCAGAACAATGAAGAAGACTATGTCAATCGAGTGTTCCCATGTATGCAGTGTTGATTACCATCCCCAAAAGCAGCACATACTTGTTACTGCAGAACATGAGTCTGGGATACACATTTGGGATCTAAGAAAACCTAAAGTTCCCATCCAAGAGCTTCCAGGACATACTCATTGGACTTGGACTGTCAAGTgtaacccagagtatgatggaatgatcttgAGTGCTGGTACGGATTCAACTGTCAACTTGTGGCTTGCCTCAACAAATCATGATGAGTTAACAACTGAAAGACAAGTCGATTCATCTGCCCGATGGGTTGATCCATTGCTTAATACGTACAGTGATTATGAAGACAGCATTTATGGGCTCACATGGAGTTCTCGTGAACCATGGATCTTTGCATCATTATCCTATGATGGCAGGGTTGTTGTAGAATCAGTTAAGCCTTTCATCTCCAAAAAATAA 1053 0.4264 MQAASSGIGYGLKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEGLFSHPNEIWDLVSCPFDQRIFSTVYSNGETYGAAIWQIPELYGELNSPQLERITSLDTDSGKIKCILWWPSGRHDKLISINEENLYLWNLDVSKKTAQVQSQDSAGMLHKLSGGAWDPHDVSSVAATCESYLQFWDVRTMKKTMSIECSHVCSVDYHPQKQHILVTAEHESGIHIWDLRKPKVPIQELPGHTHWTWTVKCNPEYDGMILSAGTDSTVNLWLASTNHDELTTERQVDSSARWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVVESVKPFISKK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00172 350 PANTHER WD-REPEAT PROTEIN 1 349 IPR040323 -
Gma04g00172 350 SUPERFAMILY WD40 repeat-like 18 340 IPR036322 GO:0005515
Gma04g00172 350 Gene3D - 14 349 IPR015943 GO:0005515
Gma04g00172 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 280 IPR001680 GO:0005515
Gma04g00172 350 SMART WD40_4 55 97 IPR001680 GO:0005515
Gma04g00172 350 SMART WD40_4 302 342 IPR001680 GO:0005515
Gma04g00172 350 SMART WD40_4 241 281 IPR001680 GO:0005515
Gma04g00172 350 SMART WD40_4 199 237 IPR001680 GO:0005515
Gma04g00172 350 SMART WD40_4 109 149 IPR001680 GO:0005515
Gma04g00172 350 PANTHER WD REPEAT-CONTAINING PROTEIN DWA2 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00172 Gma-Chr4 1474814 1480456 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00172 K23289 - gmx:100779030 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00172 04 1474814 1480456 Gma04g00172 04 1474814 1480456 ECH
Gma04g00172 04 1474814 1480456 Gma06g00163 06 1445088 1449775 GST