Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00040 ATGGAAACTCGGAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCGTCCACCACCCCTTCTCGTTCAGCCAAGCGCTCTCGTCTTTCTTCTTCTTCTTCTTCCATCCTACCTGTTAATACACGTTCTCGTTCCGCCAGGAATAACAACAACAACAACAACTCCGGTTCCATTTCTTTCATGGACCCCACCAATGAATCCTCCGGGTCCCGACGTGATCGCCGTGGCAAGAATTTCGATAGGGAAAATTCGGACAAAGGGAAGGAGAAGGAACAGGATGTTAGGATTAGGGATGCGGAGCGGGAGCGAGAGCGAGCCTTGGCGTTAAACATGGAGAGTGAAGATGTTGGGGATGACGATGATAATGATAGTGACGGCGGTGTGGGAATTCTGCACCAGAATTTGACGTCTGCCAGTAGTGCCCTTCAAGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATTTGCTTCCTGCTACTGCTATGGGCGGTTCTGCGTCATCTCCTCATCAGAGTGGCAGACTCAAGAAGATTTTGTCTGGCTTGCGTGCCGATGGGGAAGAAGGTCGTCAGGTTGAGGCATTGACGCAGCTTTGTGACATGCTCTCCATTGGCACTGAAGATTCCCTCAGCACATTTTCGGTTGACTCATTTGTTCCTGTGCTAGTGGGCTTGCTTAATCACGAGAGCAATCCCGATGTCATGCTTCTTGCGGCCAGGGCGCTAACCCATTTATGTGATGTGCTTCCTTCATCCTGTGCTGCTGTTGTGCATTATGGTGCTGTCTCTATCTTCTGTGCGAGGCTGCTCACCATAGAGTATATGGACTTGGCTGAGCAGTCTCTTCAAGCACTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTTAGAGCTGGAGCTCTGATGGCTGTTCTTTCTTACTTGGACTTCTTCTCAACAGGAGTTCAGCGGGTGGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTCCTGATGCAGCTGACTTTGTGATGGAAGCTGTTCCACTTTTGACAAACCTCCTTCAGTACCACGACTCCAAGGTCCTGGAACATGCCTCTGTTTGTTTGACACGAATAGCTGAAGCATTTGCATCATCTCCAGACAAATTAGATGAATTGTGCAATCATGGACTGGTAACACAAGCTGCCTCTCTCATTTCTACCAGCAGTTCTGGAGGTGGGCAGGCTTCTCTCAGCACTCCAACATATACTGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCTTGGAACTAGTGGCATTCTTAAAGATATACTATCCGGTTCCGGTGTTTCTTCTAACACCTCTGTTTCGCCTGCATTGAGTAGGCCAGCGGATCAGATATTTGAGATTGTGAACCTGGCAAATGAACTTCTGCCTCCATTGCCTCAAGGAACCATTTCCCTTCCTGTCAGCTCCAACTTGTTTGTGAAAGGGTCTGTTGTGAAAAAATCCTCTTCTGGCAATTCTGGGATACAAGAAGACACAAATGGAAATGTTCATGAGATATTGGCTCGTGAGAAATTATTAAATGATCAGCCTGAGTTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATATATGGTGCTAGCGTCAATGGTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTACTGAGTGTAACAAATATATCAAGTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACCTTCTCTAAGATGTTTGTCAGAGAAGGTGTGGTTCATGCAGTTGACCAACTTATTTTGGCTGGAAATTCAACCAATATATCCACACAAACATCATCTGCTGAGAAGGATAATGATTCTGTATCTGGAACTTCATCTCGCTCTAGACGCTATCGCCTGCGCAGTGGTAATTCAAATCCCGATGCGAACCCTTCAGATGATTTAAAGAGTCCAGTTCCAGTAAATGTTGGTTTGCCACCAAGTTCTGTAGAAACTCCAACAACTAATTCTAGTATCCGTGCATCTGTTAGCTCAGTTGCTAGAGCTTTTAAAGACAAGTACTTTCCTTCTGATCCTGGGTCTGTTGAAGTGGGTGTTAGTGATGATCTTTTGCATCTGAAAAATCTATGCACGAAGTTGATCACTGGTGTTGATGACCAAAGAAGCAAGGCAAAGGGAAAAGTTAAAGCTTCTGGATTTGGTCTGGATGATAATTCTAGTAACACAGAAGAGTATTTGATTGGGGTGATATCTGACATGCTAAAGGAACTTGGCAAAGGAGATAGTGTATCTACTTTTGAATTTATCGGTAGTGGTGTTGTTGAAGCCTTGCTAAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGAATATCAGAAACCAATCTCCCCAAGCTTCGCCAACAGGCACTTTCAAGGTTCAAGTCATTTGTAGCTGTTGCACTACCTTTGAGCATTGACAATGGGGCTGTTGCTCCTATGACTGTCTTAGTTCAGAAGCTTCAAAATGCGTTGGCCTCCTTGGAGCGTTTCCCTGTTATGCTGAGTAATTCATCTCGGTCATCTAGTGGAAGTGCACGTCTCTCCTCTGGGCTAAGTGCATTATCTCAGCCCATAAAATTACGTCTCTGCCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAATGTGGTACTGATTGATCCATTAGCAAGTCTAGCAGCCATCGAGGAATTTCTATGGGCTCGTGTCCAGCGTGGTGAATCTGGTCAGAAGTCTACTGTAGGCACTGAAAATTCTGAATCTGGAACAACTCCTGCTGGGGCAGGTGTTTCATCTCCTTCCTCTTATACTCCCTCCACTGCCCATCGTCATTCTACTAGAACCAGATCATCTGTTAATATAGGAGATACACCTAGAAAAGAAACATCTCAAGACAAAGGAACGAGCTCATCAAAGAGCAAGGGTAAAGCTGTATTAAAACCTGCGCAGGAGGAAGCGCAAGGACCCCAAACAAGGAATACAGTGCGCAGAAGAGCAGCTCTTGATAAAGTCGCTCAAATGAAACCTGCAAATGGCGACTCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATTGCTGAGGCTTTGGTGATTGAAGATGATGATATTTCTGATGATGAGGATGAAGACCATGAAGATGTGCTGAGGGATGATTCTCTTCCTGTCTGCTTGCCTGACAAAGTGCATGATGTGAAATTGGGTGACTCAGCTGAGGAGAGTACTGTTGCTCCAGCAACAAGTGATAGCCAGACTAATGCAGCCTCAGGTTCAAGCAGCAAAGCTGGTACAGCCAGGGGTTCTGACTCCGCTGATTTTAGGAGTGGGTTTTCATCTAGCTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATATGCTAATAGCAGAGGTTTCAGGGGCGGCAGAGATAGGCATGGGTGCCTGTTGTTTGGTAGTTCTAATGATCCTCCGAAGTTGATTTTTACTACTGGTGGGAAGCAGCTTAATAGGAATCTGAGTATATATCAGGCAATTCAAAGACAGCTTGTGCTAGATGAAGATGATGATGAGAGATTTGCTGGCAGTGACTATGTATCTGGTGATGGAAGCAGTCTGTGGGGTGATATTTACACCATCACTTATCAAAGGGCAGAAAACCAGCCAGATAAGGCGTCTACTGGAGGATCAAGTTCAAATACTTCAAAATCTGCCAAATCTGGGTCTGCCTTAAATTCAAGCTCAGAAGCTAAATTGCATCAGACATCTGTTCTAGACAGTATATTGCAGGGAGAATTGCCATGTGATCTAGAGAAATCTAATCCCACCTACAATATTTTGGCACTCCTGCGTGTGCTGGAGGGTTTCAACCAACTTGCGCCTCGTTTGAGGGTCCTAATGGTTTCTGATAGCTTTGCCAAGGGAAAAATCTTGGATTTAGATGAGCTATGTGTTACAACTGGTGCTAGGGTGCTTCTAGAGGAATTTGTAAGTGGTAAGCTTACTCCAAAATTGGCTAGGCAAATACAAGATGCCCTTGCACTATGCAGTGGTAATCTTCCCTTATGGTGTTACCAGTTGACTAAAGCGTGCCCTTTCTTGTTTCCTTTTGAGACCCGACGACAGTACTTTTATTCTACCGCATTTGGGTTATCTCGTGCACTGTATCGACTTCAACAGCAGCAAGGTGCTGATGGCCATGGTTCAACAACTGAGAGGGAGGTGAGAGTTGGGAGATTGCAGCGCCAAAAGGTTCGTGTCTCTCGAAATCGTGTCCTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGTCTGGGTCCCACCCTTGAGTTTTATACAATTCTAAGTCATGATTTGCAAAAAGTTGGACTGCAAATGTGGAGATCTTATTCTTCAGACAAACATCAAATGGAAATAGATGGAGATGAAAAGAAAAAGAAAAGTGAAGGCTCTGGGCCTAATTTGGCTGGAGATGGAGAACTTGTTCAAGCTCCTCTGGGGTTGTTTCCTCGGCCATGGCCTACAAATTCTGATGCTTCAGAGAGTAGCCAGTTTTCAAAAGTCATTGAGTATTTCCGGCTACTAGGTCGTGTTATGGCTAAAGCTCTTCAAGACGGACGACTACTGGACCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCTGCCAAGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACTTTACAAGAGTTCAATGCCCTTGTTTGTCGGAAACATTATATAGAATCTATTGGTGGTAGCTATACAGATACAATTGTTAACTTGTATTTTCATGGTGCACCAATCGAAGATCTTTGCTTAGATTTTACTCTCCCTGGTTATCCTGAATACACCTTGAAGCCAGGAGATGAAATTGTTGATATCAACAATTTGGAGGAGTATATATCCTTGGTGATCGATGCAACTGTCAAGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAACCAGGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATTTGCTTTGCGGCCGCAGGGAGTTGTGGGAGGCTGAGACACTTGCTGATCATATAAAATTCGACCATGGGTACAATGCAAAGAGCCCTGCCATTGTTAATTTACTTGAAATTATGGGAGAGTTCACACCAGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGTTAATAATTCATCTAATGGGAATGGACCTTCAGAATCAGCAGATGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGAAACTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAGTTGCTCTATGCAATCAATGGATCAGGGTTTATTGACTTTATTCTCGAGGGTCAGTTGTTTTTTTTGGTTGGATGTGCTTTGCTCCTCGCTTCTCGAATAATAGTGTCTCATTTTCCGTGCTCAATGCAAATTGCAAGGTTGTGGAATTATTCAGTTGAATCGGGTCGCCACATTTTCAAAGTGTAG 5814 0.4439 METRSRKRAEASSAAPSSSSTTPSRSAKRSRLSSSSSSILPVNTRSRSARNNNNNNNSGSISFMDPTNESSGSRRDRRGKNFDRENSDKGKEKEQDVRIRDAERERERALALNMESEDVGDDDDNDSDGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPATAMGGSASSPHQSGRLKKILSGLRADGEEGRQVEALTQLCDMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGTSGILKDILSGSGVSSNTSVSPALSRPADQIFEIVNLANELLPPLPQGTISLPVSSNLFVKGSVVKKSSSGNSGIQEDTNGNVHEILAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGTFSKMFVREGVVHAVDQLILAGNSTNISTQTSSAEKDNDSVSGTSSRSRRYRLRSGNSNPDANPSDDLKSPVPVNVGLPPSSVETPTTNSSIRASVSSVARAFKDKYFPSDPGSVEVGVSDDLLHLKNLCTKLITGVDDQRSKAKGKVKASGFGLDDNSSNTEEYLIGVISDMLKELGKGDSVSTFEFIGSGVVEALLNYFSCGYFSKDRISETNLPKLRQQALSRFKSFVAVALPLSIDNGAVAPMTVLVQKLQNALASLERFPVMLSNSSRSSSGSARLSSGLSALSQPIKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWARVQRGESGQKSTVGTENSESGTTPAGAGVSSPSSYTPSTAHRHSTRTRSSVNIGDTPRKETSQDKGTSSSKSKGKAVLKPAQEEAQGPQTRNTVRRRAALDKVAQMKPANGDSTSEDEELDISPVEIAEALVIEDDDISDDEDEDHEDVLRDDSLPVCLPDKVHDVKLGDSAEESTVAPATSDSQTNAASGSSSKAGTARGSDSADFRSGFSSSSRGAMSFAAAAMAGLGYANSRGFRGGRDRHGCLLFGSSNDPPKLIFTTGGKQLNRNLSIYQAIQRQLVLDEDDDERFAGSDYVSGDGSSLWGDIYTITYQRAENQPDKASTGGSSSNTSKSAKSGSALNSSSEAKLHQTSVLDSILQGELPCDLEKSNPTYNILALLRVLEGFNQLAPRLRVLMVSDSFAKGKILDLDELCVTTGARVLLEEFVSGKLTPKLARQIQDALALCSGNLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREVRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSYSSDKHQMEIDGDEKKKKSEGSGPNLAGDGELVQAPLGLFPRPWPTNSDASESSQFSKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLCQDLDLHDILFIDAELGKTLQEFNALVCRKHYIESIGGSYTDTIVNLYFHGAPIEDLCLDFTLPGYPEYTLKPGDEIVDINNLEEYISLVIDATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPQELDNLLCGRRELWEAETLADHIKFDHGYNAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNNSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINGSGFIDFILEGQLFFLVGCALLLASRIIVSHFPCSMQIARLWNYSVESGRHIFKV 1937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00040 1937 MobiDBLite consensus disorder prediction 1 131 - -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 10 69 - -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 960 1108 - -
Gma04g00040 1937 SMART arm_5 335 373 IPR000225 GO:0005515
Gma04g00040 1937 SMART arm_5 292 332 IPR000225 GO:0005515
Gma04g00040 1937 SMART arm_5 209 250 IPR000225 GO:0005515
Gma04g00040 1937 MobiDBLite consensus disorder prediction 652 715 - -
Gma04g00040 1937 SMART hect_3 1479 1890 IPR000569 GO:0004842
Gma04g00040 1937 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 45 1888 IPR045322 GO:0006511|GO:0061630
Gma04g00040 1937 MobiDBLite consensus disorder prediction 1129 1163 - -
Gma04g00040 1937 SUPERFAMILY ARM repeat 177 646 IPR016024 -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 960 1011 - -
Gma04g00040 1937 SUPERFAMILY Hect, E3 ligase catalytic domain 1460 1882 IPR035983 GO:0004842
Gma04g00040 1937 MobiDBLite consensus disorder prediction 1537 1553 - -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 1124 1163 - -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 1270 1300 - -
Gma04g00040 1937 Gene3D - 167 657 IPR011989 -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 652 689 - -
Gma04g00040 1937 Gene3D Hect, E3 ligase catalytic domains 1409 1653 - -
Gma04g00040 1937 ProSiteProfiles HECT domain profile. 1591 1892 IPR000569 GO:0004842
Gma04g00040 1937 Pfam HECT-domain (ubiquitin-transferase) 1561 1885 IPR000569 GO:0004842
Gma04g00040 1937 Gene3D Hect, E3 ligase catalytic domain 1762 1887 - -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 70 115 - -
Gma04g00040 1937 Coils Coil 99 119 - -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 1537 1560 - -
Gma04g00040 1937 CDD HECTc 1468 1886 IPR000569 GO:0004842
Gma04g00040 1937 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 45 1888 - -
Gma04g00040 1937 MobiDBLite consensus disorder prediction 1069 1103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00040 Gma-Chr4 336301 346162 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00040 K10590 - gmx:100791450 3368.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00040 04 336301 346162 Gma04g00040 04 336301 346162 ECH
Gma04g00040 04 336301 346162 Gma06g00036 06 313201 322500 ECH
Gma04g00040 04 336301 346162 Gma06g00036 06 313201 322500 GST