Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02069 ATGAGGATACCTTCAACTCTCGTGGAAGTGCTTCTGGTACTTGCATTGTTCTGTTGTAGCCTATGGACAGTGTGGAGCAGCACCACTCTTTGCCAACAGACGAACGAGGAAGTTCGACCTCACAGTGTCAGCATCACCGAATTTGGTGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACCTGAATTCCTTTGCAGACAAAGGTGGAGCAAAGCTTTTTGTTCCGGCAGGCCGGTGGTTGACTGGTAGTTTTGATCTCATCAGCCATCTAACTTTGTCGTTGGACAAGGATGCAGTAATTCTGGGATCAACGAACCCTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCGTATGGGAGAGGAAGAGAGTTGCCAGGTGGAAGGCATAAGAGCCTCATTTATGGACATAATTTGACTGATGTTATCATAACAGGTAATAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAACAGGTTTTGGAACAGAAGTCTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACAGGGGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACAATCCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCAGGATCCTTGCTCCTCATGATTCGCCAAACACAGATGGGATTGATCCAGATTCTTCTGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTGCCATCAAGAGCGGGTGGGATGAGTATGGCATTGCATATGGTCGCCCAAGCACAAACATTATCATCCACAGGCTAGTTGGTAGAACTCAAACAAGTGGGATTGCTATTGGAAGTGAGATGTCTGGTGGTGTATCTGAAGTTCATGCAGAAGATATTCAATTCTATGATTCATATAATGCAATCAGAATAAAGACTTCTCCTGGCAGGGGTGGTTACGTTAGAAACATCTATGTCTCTAACGTGACCTTGGCTAATGTAGATATTGCTATTACGTTCACTGGTTTATATGGGGAGCATCCAGATGATGCTTATAACCCAAATGCTCTACCTGTAATAGAAAAGATTACAATCAAGGATGTGGTAGGAGAAAATATCAAAACTGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTCAACATTTGCCTATCAAACATCATCCTTAATGTGACCTCAAACTATCCATGGAACTGCTCCTACGTTAAAGGATATTCTGACTTGGTCCAACCAGAAGCTTGTGAGCCTCTCAAGGAGAGAATATTCCCTGGTCATTGTTCAGATTGTTACTATTTGACAAATCAAATTCAGAGTTCCAATAGTCAAAATAGAGCAGGACAAACTTCAGGTGACATAAGAGGTTGA 1407 0.4222 MRIPSTLVEVLLVLALFCCSLWTVWSSTTLCQQTNEEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLSLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVIITGNNGTIDGQGSIWWNRFWNRSLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVRILAPHDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIIIHRLVGRTQTSGIAIGSEMSGGVSEVHAEDIQFYDSYNAIRIKTSPGRGGYVRNIYVSNVTLANVDIAITFTGLYGEHPDDAYNPNALPVIEKITIKDVVGENIKTAGLIEGIEGDNFVNICLSNIILNVTSNYPWNCSYVKGYSDLVQPEACEPLKERIFPGHCSDCYYLTNQIQSSNSQNRAGQTSGDIRG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02069 468 SUPERFAMILY Pectin lyase-like 34 431 IPR011050 -
Gma03g02069 468 PANTHER OS07G0245200 PROTEIN 6 450 - -
Gma03g02069 468 Pfam Pectate lyase superfamily protein 43 89 IPR024535 -
Gma03g02069 468 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Gma03g02069 468 SMART pbh1 271 292 IPR006626 -
Gma03g02069 468 SMART pbh1 298 319 IPR006626 -
Gma03g02069 468 SMART pbh1 237 269 IPR006626 -
Gma03g02069 468 SMART pbh1 327 348 IPR006626 -
Gma03g02069 468 SMART pbh1 210 236 IPR006626 -
Gma03g02069 468 Gene3D - 24 419 IPR012334 -
Gma03g02069 468 PANTHER PECTIN LYASE-RELATED 6 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02069 Gma-Chr3 46232705 46235584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02069 1 459 Glycoside Hydrolase AT3G62110 66.809 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02069 - - gmx:100817309 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02105 19 49902697 49905550 Gma03g02069 03 46232705 46235584 GST
Gma03g02069 03 46232705 46235584 Gma10g01370 10 40517597 40521224 PCT
Gma03g02069 03 46232705 46235584 Gma02g00072 02 807454 811382 PCT
Gma10g01370 10 40517597 40521224 Gma03g02069 03 46232705 46235584 PCT
Gma02g00072 02 807454 811382 Gma03g02069 03 46232705 46235584 PCT