Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00072 ATGAGGACACTTCTAACCGATGGTGGCACGTTTCTCTTGCAGTTGGTGGATGTGTTTTTGGTTCTTGCATTGTTCAGTTGTAGCACATGGACAGTGTGGAGCAGCTCATGCTGCAATCAGATAAACTTGAATGAAGTCCGGCCTCACAGTGTCAGTATTACTGAATTTGGAGCTGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAGAATGCCATTTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAACTTTTTGTCCCAGCTGGCCGGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACTCTGTGGTTGGACAACGATGCAGTAATTCTTGGATCAACGAACTCTGATGACTGGCCAGTTGTGGATCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCTGGTGGAAGGCATAGAAGCCTCATTTATGGGTGCAATTTAACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAACAATTTTTGGAACAAAACACTGAATTATACACGTCCTCATTTGGTTGAGTTGATGAATTCAACTGGGGTTCTCATCTCAAATGTAACTTTCTTGAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTAACAATTCAGAACGTCACAATCATTGCTCCTCTTAGTTCACCAAATACTGATGGCATTAATCCAGACTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGGCCGACCCAGTACAAATATTAACATCCGCAGGCTCATTGGGAAGACAACGAGTGCAGGGATTGCTATCGGAAGTGAGATGTCTGGAGGAGTATCGGAAGTTCATGCAGAAGATATTTACATTTTTGATTCACATAGTGCAATTAGAATAAAAACTTCTCCTGGAAGGGGTGGTTATGTAAGAAATGTCTATATCTCTAACATGATCTTGGCTAATGTAGATATTGCTATTAGGTTTACTGGTTTATATGGAGAACATCCTGATGACACTTATGACCCAGATGCTCTACCGGTAATAGAAAGGATTACTATCAAGGATGTGATAGGGGTAAAAGTCAAACATGCCGGCCTTATACAGGGTATTAAAGGTGACAACTTTGTCAATATCTGCCTATCAAACATCACCCTTAATGTGAGCTCAAAATTGCCATGGAACTGCTCTTACATTAAAGGATTCTCTGACTTGGTTTCACCAGAAGCTTGTGAGCCTCTCAAAGAAAGAATATTCCCTGAGCATTGTTCAGACTGTTACTATTTACCAAACCACTTGAAGAGTTTGAGTAATCAAAACTGGGGTGCTTGGTTACTGTCTTGA 1419 0.4109 MRTLLTDGGTFLLQLVDVFLVLALFSCSTWTVWSSSCCNQINLNEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDNDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGCNLTDVVITGNNGTIDGQGSIWWNNFWNKTLNYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIQNVTIIAPLSSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTYDPDALPVIERITIKDVIGVKVKHAGLIQGIKGDNFVNICLSNITLNVSSKLPWNCSYIKGFSDLVSPEACEPLKERIFPEHCSDCYYLPNHLKSLSNQNWGAWLLS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00072 472 SUPERFAMILY Pectin lyase-like 45 439 IPR011050 -
Gma02g00072 472 PANTHER PECTIN LYASE-RELATED 15 455 - -
Gma02g00072 472 PANTHER OS07G0245200 PROTEIN 15 455 - -
Gma02g00072 472 Pfam Glycosyl hydrolases family 28 146 425 IPR000743 GO:0004650|GO:0005975
Gma02g00072 472 Gene3D - 30 425 IPR012334 -
Gma02g00072 472 SMART pbh1 335 356 IPR006626 -
Gma02g00072 472 SMART pbh1 245 277 IPR006626 -
Gma02g00072 472 SMART pbh1 218 244 IPR006626 -
Gma02g00072 472 SMART pbh1 149 176 IPR006626 -
Gma02g00072 472 SMART pbh1 306 327 IPR006626 -
Gma02g00072 472 SMART pbh1 279 300 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00072 Gma-Chr2 807454 811382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00072 15 472 Glycoside Hydrolase AT3G62110 68.455 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00072 - - gmx:100786985 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01370 10 40517597 40521224 Gma02g00072 02 807454 811382 GST
Gma19g02105 19 49902697 49905550 Gma02g00072 02 807454 811382 PCT
Gma03g02069 03 46232705 46235584 Gma02g00072 02 807454 811382 PCT
Gma02g00072 02 807454 811382 Gma19g02105 19 49902697 49905550 PCT
Gma02g00072 02 807454 811382 Gma03g02069 03 46232705 46235584 PCT