Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02068 ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTGAGAGAGAGATTTCAAACCCTGAGAAGAGTCCAATTCCGCCCCCTCCAAGTTTTGTAGCCTCATCACCCGGTTTTCCTCCACCAAAATTGCATTTACAGCAAGATCAAGCCTCTTCCCGTTCCGTTAAAACCCCAAACGTTTTATCACCAGCCAATGGGGTTACCACTGGCAGTCCTGTTCCTCACTTGAGCACCCCTCCTGGACCACCTGTTTTTACTTCGCCGGTCCGTCCAGCTGCTGTTCCTTTTCGCACATCACCTGCATTGCCTCAGCCACTTGCATTTTCTCCAGGCTCTTCTTTGCCAACATCATCATCGCCGCTGCAATTTTCAAATGGAACATTTGAGTCACAGCACCAAGTTTCTGATAGTATAGAGGACCATGTTCCCTTGGGAGAGTCATCCTTTGTTCTTTTTTCAGCTCATAAGGTATTGAAACAGAAGAAACAAGCTAATGTACCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTTTCAGTGGGCCCTCAGGTAATACAGCGTGATCCTCATCGCTGCCAAAGCTGTGGTGCTTATGCAAATATATATTGCAACATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGGAAGTGAGGGGGAGTACATTGCGCATAGCAAGGAAGATCTTCACAGATTTCCGGAATTATCTTCACCTATGTTTGACTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGTTTCTGATTCTAGAATGTCTGCCCCAATTGTTCTTGTTATAGATGAATGTTTAGATGAACCACACCTACACCATCTACAGAGTTCTTTGCATGCTTTTGTTGATTCTCTCCCGCCGACAACGAGATTAGGAATTATACTATATGGTCGTACTGTATCAGTGTATGATCTTTCTGAAGAGGCTATGGCATCTGCTGACGTGCTTCCTGGGGACAAATCACCAAGTCAAGAATCTTTGAAAGCATTGATTTATGGTACTGGTATATACTTGTCACCAATGCATGCTTCGCTGGCTGTTGCACATTCCATATTTTCATCATTGAGGGCATATAAGTTGAATGTACCAGAAGCTTCTCGTGATCGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGCCCATCTGCTGATCTGTCCCGGGGGTTGGTCAAAAGGTCAGGGGGAAATAGTAGAATTATTGTCTGTGCTGGCGGACCGAACACTTATGGGCCTGGATCTGTTCCTCATTCTTTTAGTCACCCTAATTATCCTTACATGGAAAAGACAGGAATTAAATGGATGGAGAATCTTGGTCATGAGGCTCATCGACACAATACTATAATTGATATTTTATGTGCTGGAACATGCCCTGTAAGAGTTCCTATCTTACATCCTCTTGCAAAAACATCAGGTGGAGTTTTGGTTCTGCATGATGATTTTGGGGAAGCCTTTGGTGTTAATTTGCAAAGGGCATCTGCCAGGTCAGCAGGCTCTCATGGTTTGTTAGAATTGCGCACGTCAGATGATATTCTCATTACTCAAGTTGTTGGTCCTGGGGAAGGTTCACGTGTAGATACCCATGAAACATTTAAAAATGACACTGCTCTTTATATTCAAATGCTAAGTGTTGAGGAAACACAAAGTTTCTCTCTCTCCATGGAAACCGAAGGAGATATCAAAAGTGATTTTGTCTTTTTCCAATTTGCAATTCAGTATTCAAATGTGTATCAAGCTGATGTGTCGAGGGTCATTACTGTTAGACTGGCAACGGTAGATAGTATTTCTGCGTATCTTGAGAGTGTTCAGGATGAAGTGGCCGCTGTACTCATTGCTAAAAGAACCCTGTTACGAGCAAAAAACCATTCTGATGCAATTGATATGCGAGCAACAGTAGACGAAAGAATCAAGGACATTGCTCTAAAATTTGGCTCCCAATTACCTAAATCAAAACTTCATAGCTTCCCAAAGGAGCTTTCTCTCCTACCAGAGCTCCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGTATTATTGGCCATGAAGATGAGAGGTCTGTGCTGAGGAACTTGTTTCTGAATGCATCCTTTGATCTATCACTCAGAATGGTAGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAGCTACCGGCGTATGATCTTGCTATGCAGTCTGATGCTGCTGTTGTACTCGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTCTAGCTGCATGTAGGACATTGGCTGAAGAGCTGACTGAGTACCGATTTCCAGCACCTCGAATCCTTGCATTTAAGGAGGGTAGCTCCCAGGCTCGATACTTTGTCTCTCGTCTCATTCCAGCTCACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTTCCACAACTGAGGTCGTTGACATCAGAACAACGAACAAAGCTGAAAGCCAGTTTTGTTCACTTCGATGATCCTAGTTTCTGTGAATGGATGCGAAGTTTGAAAGTGGGCGAACGGCGCACTTTATCTGAAAGCGAAAACCCTAGGGTCAACCGTGACGCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGGGATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCAAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGGTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATCGGAAGGCGGAGAACTTCGGAGAGTGGTATTCCGAGGTTGTTGTTAATGCCGAAATGATTGAATACTATGATATTTCCGGTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCCCATTGTTTGTGTCTCCTGGAGTTCTGCAAAAGGAGAAGGACCACGTTGAGGGTTTTGCTCCTGAGGTTGCTTGGGTGACAAAGTCTGGGGAATCTGAATTAGAAATTCCTATTGCTATTCGTCCTACTAGTGAAACTGTCATGTATCCCTACTACTCTAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTCAGATGGGAGTTCAGCAACCCCACTCCATTCATCAGGTATCGTGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAGGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTCTACACTACTAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGTTTGGGCCAAAATTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAAAAGGGAGAGAGAGCAATGGTCTGGCAGAATTCATGGGCCTATAGTACTCGAACTATCGGTGTCATGGTGATGGTTCATGGTGATGACAAGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTCATTGTGATTCCTGTGCCTTACAAAGATGCCGATACTCAAGGAATCTTTGATGCCTGTTCTGCAACTGTGAATACATTGAATGAAGCAGGTATTCGCGCTGAGTCAGATTCTAGAGATAATTATTCTCCTGGATGGAAGTATTCTAATTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCTGATTTGGTTGTGGAAATAAAAAAGTTGCTTGATACTATTCAACAGAACCTGTTTGATGTTGCAAAACAAAAACGAGATGAATGCATTCAGATCATACACACTTGGGATGAATTTGTGCAAGCTTTGAACCAAAGAAAAATGATCTTTGCTCCTTGGTGTGACGAGGAGGAGGTGGAGGCTGATGTCAAAGCCAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTTTGCAGCCCCTTTGATCAGCCAGAACTCCCAGAAGGCACCAAGTGCTTTGCATCAGGAAAGCCCGCAACAAAGTGGACATACTGGGGCAGAAGTTACTAG 4266 0.4428 MANPTQPNVGFTPEREISNPEKSPIPPPPSFVASSPGFPPPKLHLQQDQASSRSVKTPNVLSPANGVTTGSPVPHLSTPPGPPVFTSPVRPAAVPFRTSPALPQPLAFSPGSSLPTSSSPLQFSNGTFESQHQVSDSIEDHVPLGESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSVGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSEGEYIAHSKEDLHRFPELSSPMFDYVQTGNKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIILYGRTVSVYDLSEEAMASADVLPGDKSPSQESLKALIYGTGIYLSPMHASLAVAHSIFSSLRAYKLNVPEASRDRCLGTAVEVALAIIQGPSADLSRGLVKRSGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTGIKWMENLGHEAHRHNTIIDILCAGTCPVRVPILHPLAKTSGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEGSRVDTHETFKNDTALYIQMLSVEETQSFSLSMETEGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLATVDSISAYLESVQDEVAAVLIAKRTLLRAKNHSDAIDMRATVDERIKDIALKFGSQLPKSKLHSFPKELSLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTEYRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSEQRTKLKASFVHFDDPSFCEWMRSLKVGERRTLSESENPRVNRDATIALARFNRLRLLCNGIRCSSFTMAGTEAKKTESKKPAAKQSGGKKKEVKKETGLGLTHRKAENFGEWYSEVVVNAEMIEYYDISGCYILRPWSMAIWEIMQEFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGESELEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRYREFLWQEGHTAFASKEEADAEVLEILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGERAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACSATVNTLNEAGIRAESDSRDNYSPGWKYSNWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIASADLVVEIKKLLDTIQQNLFDVAKQKRDECIQIIHTWDEFVQALNQRKMIFAPWCDEEEVEADVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPATKWTYWGRSY 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02068 1421 MobiDBLite consensus disorder prediction 45 74 - -
Gma03g02068 1421 MobiDBLite consensus disorder prediction 20 36 - -
Gma03g02068 1421 SUPERFAMILY Zn-finger domain of Sec23/24 186 255 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gma03g02068 1421 Pfam Prolyl-tRNA synthetase, C-terminal 1348 1421 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 Gene3D Severin 738 833 IPR029006 -
Gma03g02068 1421 SUPERFAMILY beta-sandwich domain of Sec23/24 39 620 - -
Gma03g02068 1421 SUPERFAMILY Class II aaRS ABD-related 1213 1340 - -
Gma03g02068 1421 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 59 867 IPR037364 -
Gma03g02068 1421 SUPERFAMILY Class II aaRS and biotin synthetases 946 1212 IPR045864 -
Gma03g02068 1421 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 724 864 IPR036180 -
Gma03g02068 1421 MobiDBLite consensus disorder prediction 913 936 - -
Gma03g02068 1421 CDD ProRS_core_arch_euk 947 1208 IPR033721 -
Gma03g02068 1421 CDD gelsolin_like 724 815 - -
Gma03g02068 1421 SUPERFAMILY Helical domain of Sec23/24 622 722 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gma03g02068 1421 Gene3D von Willebrand factor, type A domain 272 517 IPR036465 -
Gma03g02068 1421 TIGRFAM proS_fam_I: proline--tRNA ligase 943 1421 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 CDD trunk_domain 266 509 - -
Gma03g02068 1421 SUPERFAMILY vWA-like 273 505 IPR036465 -
Gma03g02068 1421 Gene3D Sec23/Sec24 helical domain 610 730 - -
Gma03g02068 1421 Hamap Proline--tRNA ligase [proS]. 941 1421 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 1040 1206 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma03g02068 1421 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 59 867 - -
Gma03g02068 1421 CDD ProRS_anticodon_zinc 1214 1421 - -
Gma03g02068 1421 Gene3D - 180 245 - -
Gma03g02068 1421 MobiDBLite consensus disorder prediction 1 88 - -
Gma03g02068 1421 Gene3D - 1219 1339 IPR036621 -
Gma03g02068 1421 Pfam Sec23/Sec24 trunk domain 274 500 IPR006896 GO:0006886|GO:0006888|GO:0030127
Gma03g02068 1421 Pfam Sec23/Sec24 zinc finger 192 230 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gma03g02068 1421 MobiDBLite consensus disorder prediction 104 134 - -
Gma03g02068 1421 PRINTS Prolyl-tRNA synthetase signature 1040 1051 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 PRINTS Prolyl-tRNA synthetase signature 1080 1091 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 PRINTS Prolyl-tRNA synthetase signature 999 1017 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 PRINTS Prolyl-tRNA synthetase signature 1070 1078 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 MobiDBLite consensus disorder prediction 105 133 - -
Gma03g02068 1421 Gene3D Bira Bifunctional Protein; Domain 2 941 1218 IPR045864 -
Gma03g02068 1421 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 1003 1218 IPR006195 -
Gma03g02068 1421 Pfam Sec23/Sec24 helical domain 623 719 IPR006900 GO:0006886|GO:0006888|GO:0030127
Gma03g02068 1421 Pfam Sec23/Sec24 beta-sandwich domain 518 609 IPR012990 -
Gma03g02068 1421 Gene3D - 1342 1421 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 SUPERFAMILY C-terminal domain of ProRS 1344 1421 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Gma03g02068 1421 Pfam Anticodon binding domain 1225 1321 IPR004154 -
Gma03g02068 1421 SMART ProRS_C_1_2 1348 1421 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02068 Gma-Chr3 46209313 46222001 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02068 - - gmx:100804134 1666.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02103 19 49877628 49888979 Gma03g02068 03 46209313 46222001 GST