Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02028 ATGGAAGATTTGGGAGGTACCCAGTTCGACGGCCTCAGCAATGCTGTGAGGAGGAAGAGGAGTCAGACTTCGCGCAGGCCTCGGCCTGATTCACAGCATGCTTCTGAAGGTCAGGAACTGTCTCCCTTGTCGTCGACGCCTTCGGAGGATGCTGGCAAGGCCTCTAGTGATGAGAATGTTGGTTACGATGCGAATTCCAAGAGAAAGGAATTCAATCTTAACCATTGTGTCTCTCAAACCTCCTCTGGTACTGGAGCTGAAGACGAAAAATCCCATAAAAAGAGTAAAAAAGATGGAGGGTTCCATACATTTTATAGTAATGAGCCTGTACGGAGCGGTTCAAATAATAAACGCTGTAGTGAAGGGGTTCTTGCTCCAGCAAATTGGAAAGGTTCTAGCAAAACAAAGGATAGCTTGGATTCAGAGTTGAGAAATGCAGATTTGTATGGTGGAAGGAATCCTGAGAGCATGAGTCTGGCACAGTTTGGTGGCTCTCAGGATGGATTGGGGAATGAGAACCGAGTTAAAAAGGTTAAACTCAAGGTTGGCGGAGTGACACGTACTATTCAAGCCAATTCGGCAACCAATGGTGCTTCGGGAAGTGGAACAACAATGAAGTCTCGTTCATCAGATGCCTCCAGACCACGCCAAAAGCAACAGAGTAATTCAGACGATAATAACTCTCCTTCGGATAAGAGGAGTCGTCTACAAGGTGTTCCGTGGAAGGATTTCTCGAGGGGTGGTTTTGGTCTTGGGAAGGAGGAATCATTGATGGGGAAGATTTCTGGAAAGAACACAACTAGTAAGCTGGGAGACAAGTCTGAACCAGTTCGTAAGAGCAAGCGAGTACCAAAGAGACGTGTACTTGATGGGGAATTTGGTGATGACGATGACGAGGATGATGAGATTCGGTACTTGGAAAAGCTGAAAACGTCAAAAGTTTCTGCAGTCTATAGAGATGAAGAAGAATTAAACAAGAAACATCGAAAGCTATCTAGTGTCTCTAATTTGGAAAATGCTGCCCCAAGGTCAGGCAAAGACGGTAAGAAAAGGTCTAGATCTGATAGAGTGTATGAGGACACAGATTATGAGGATGAAGACGAGTCAGGGTCTGATGGTGAGCTTGAGGATAAGAAAAAGAAAAAACAGAGGAAGGAATCTGTTGATGTATTGATGGACAGTAAGAGGGAAATGACTCTTACGACTCGTCAACGGGCCCTTCAATCAAGTAAAGATGCCTCTGCATCTAGTGCTAGTGTAATTGAGTTTCCCAACGGATTACCACCTGCCCCGCCTAGAAAACAAAAGGAGAAGCTTTCAGAGGTCGACCAGCAACTGAAGAAAGCTGAGGCTGCGCAGAGGCGTAGAATGCAAGTTGAGAAGGCTGCCAGGGAATCTGAGGCTGAAGCTATCAGGAAAATACTTGGTCAAGACTCCAGTAGGAAAAAGCGAGAAGAGAAAATAAAGAAGCGCCAGGAAGAACTGGCACAGGAAAGGGCAGCCAATGCACTAATGCTTGCATCAAATACCATCAGATACACAATGGGTCCGACTGGAACGTTTGTGACTTTTTCTGAGGAAATGGGGCTTCCTAGCATATTGAACTCCAAACCTGTCAGTTATCCCCCACCTCGTGAGAAGTGTGCTGGTCCATCTTGTACAAATCCTTATAAGTATCGGGATTCAAAATCAAAGCTTCCTCTTTGCAGTCTCCAATGCTACAAGGCTGTCCAGGAGAAGagcctatcacttgcttcacacacttatcttccctcctgGAAATTGATAGGGAATAAATATAGTACTAAGAAATCTCTCGGGAAGGTGAAGGCCGTGTACGCTAATGAATTTTGGGCGCCAGAGACGAGTTCAAGTCAGGGAATTTGggatgatttgcgagtcccatcttccccttattttcctgcatatgcacaaggacatgaaccaccaccaatggtgcaggagcggttccagagtAGAATAATACGTTGTGGGGGAGCCGTAGATGATGATATGTCTAACATCTTAGTCGCCCAGCTTCTTTACCTTGATGTCCTAACAAGGTTTGATATTGTCATGTACGTAAGTTCTCCGGGAGGATCAGTTACAGCTGGCATGGCAATATTTGATACAATGAGGCATATTCGACCTGATGTGTCCACTGTTTGCATTGGACTGGCAGCTAGtaagggtgcttttctgctcagtgcagggactaaaggaaagagatatagcttgccaaattcaaggataatgattcaccaaccgcttagtggccaaggaggacaaactgacatagatattcagGCAAATGAAATGCTGCATCACAAGGCAAACCTGGCGAAAGAAGCCAAAGAATATGGATTCATAGATGGTGCCATCATGAACCCTCTCAAAGCTCTCCAGCCATTGCCGGCTGCAGTGGAAGGTAGAATGGAGCCGTGCACGTGTGCTTTTGGGATTTGGATTCGCACGGCTATTGGATAA 2487 0.4105 MEDLGGTQFDGLSNAVRRKRSQTSRRPRPDSQHASEGQELSPLSSTPSEDAGKASSDENVGYDANSKRKEFNLNHCVSQTSSGTGAEDEKSHKKSKKDGGFHTFYSNEPVRSGSNNKRCSEGVLAPANWKGSSKTKDSLDSELRNADLYGGRNPESMSLAQFGGSQDGLGNENRVKKVKLKVGGVTRTIQANSATNGASGSGTTMKSRSSDASRPRQKQQSNSDDNNSPSDKRSRLQGVPWKDFSRGGFGLGKEESLMGKISGKNTTSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYRDEEELNKKHRKLSSVSNLENAAPRSGKDGKKRSRSDRVYEDTDYEDEDESGSDGELEDKKKKKQRKESVDVLMDSKREMTLTTRQRALQSSKDASASSASVIEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREEKIKKRQEELAQERAANALMLASNTIRYTMGPTGTFVTFSEEMGLPSILNSKPVSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAVQEKSLSLASHTYLPSWKLIGNKYSTKKSLGKVKAVYANEFWAPETSSSQGIWDDLRVPSSPYFPAYAQGHEPPPMVQERFQSRIIRCGGAVDDDMSNILVAQLLYLDVLTRFDIVMYVSSPGGSVTAGMAIFDTMRHIRPDVSTVCIGLAASKGAFLLSAGTKGKRYSLPNSRIMIHQPLSGQGGQTDIDIQANEMLHHKANLAKEAKEYGFIDGAIMNPLKALQPLPAAVEGRMEPCTCAFGIWIRTAIG 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02028 828 MobiDBLite consensus disorder prediction 401 421 - -
Gma03g02028 828 MobiDBLite consensus disorder prediction 319 333 - -
Gma03g02028 828 Coils Coil 481 501 - -
Gma03g02028 828 MobiDBLite consensus disorder prediction 271 292 - -
Gma03g02028 828 MobiDBLite consensus disorder prediction 343 359 - -
Gma03g02028 828 MobiDBLite consensus disorder prediction 71 85 - -
Gma03g02028 828 SMART PAPA_1_2 443 528 IPR006880 GO:0031011
Gma03g02028 828 Pfam Clp protease 656 782 IPR023562 -
Gma03g02028 828 MobiDBLite consensus disorder prediction 34 53 - -
Gma03g02028 828 MobiDBLite consensus disorder prediction 319 438 - -
Gma03g02028 828 MobiDBLite consensus disorder prediction 86 101 - -
Gma03g02028 828 Gene3D - 640 797 - -
Gma03g02028 828 Coils Coil 442 469 - -
Gma03g02028 828 MobiDBLite consensus disorder prediction 186 227 - -
Gma03g02028 828 CDD S14_ClpP_2 657 791 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma03g02028 828 PANTHER INO80 COMPLEX SUBUNIT B 1 585 IPR029523 GO:0006338|GO:0031011
Gma03g02028 828 MobiDBLite consensus disorder prediction 1 301 - -
Gma03g02028 828 PRINTS Clp protease catalytic subunit P signature 690 710 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma03g02028 828 PRINTS Clp protease catalytic subunit P signature 721 738 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma03g02028 828 PRINTS Clp protease catalytic subunit P signature 742 761 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gma03g02028 828 MobiDBLite consensus disorder prediction 107 121 - -
Gma03g02028 828 ProSitePatterns Endopeptidase Clp histidine active site. 743 756 IPR033135 -
Gma03g02028 828 Pfam PAPA-1-like conserved region 444 528 IPR006880 GO:0031011
Gma03g02028 828 MobiDBLite consensus disorder prediction 472 493 - -
Gma03g02028 828 Pfam HIT zinc finger 544 575 IPR007529 -
Gma03g02028 828 PANTHER HIT ZINC FINGER AND PAPA-1-LIKE DOMAIN-CONTAINING PROTEIN 1 585 - -
Gma03g02028 828 SUPERFAMILY ClpP/crotonase 648 793 IPR029045 -
Gma03g02028 828 MobiDBLite consensus disorder prediction 373 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02028 Gma-Chr3 45857442 45867336 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02028 - - gmx:100793005 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02028 03 45857442 45867336 Gma03g02028 03 45857442 45867336 ECH
Gma03g02028 03 45857442 45867336 Gma19g02064 19 49547303 49550427 ECH
Gma17g00304 17 2446934 2451414 Gma03g02028 03 45857442 45867336 ECH
Gma19g02064 19 49547303 49550427 Gma03g02028 03 45857442 45867336 GST