Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01836 ATGCGAAAGGACGTATCGATGCGTTTGGTCCTCATAGAAGAAGCGTCGACCGACGACCGAGACCGAGAGAACATGTGTGATTACGCGATTCCCCTCTTTCTGAGATATTTCGAATTTCGATACTTTGATCAGATCCACAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGCCCCTATAATACTGTACATGAAGGAAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTGCAAATTGGCAACGGAGGTTTACCATGGAAGATATACTGACCCAGCTGAAGAAGGAAATGGCGGCTTCACATAACCGCAAGCTTGTCCAACCTCCTGAAGTGGCGTTCTCTCTTCCCCTGCGAATCTTTTTCTTCTTCTTCTCTTCAAACCCTAAATCGTGGCCTCGTAAATTAACCACCAAAGTGATCGAACTCAATACCCTAAAAGCCATGGCCCAATCCCATGGATCCATCCTCACTCGATCAGTGTGGTCCTCCAATCTCGAATCGGAGTTCGACTTAATCCGATCCGTCATCGATTCGTTCCCTCTCATCTCGATGGACACCGAGTTCCCCGGTGTCGTCGTGCGTCCCGACGCCGGCGACCCCTCCTTCCGCCACCGCCAACCCGTCGCGCACTACGCCGTACTCAAAGCCAACGTCGACCGCCTCCACCTGATTCAGATCGGCCTTACCCTTTCCGACAACGCCGGAAACCTTCCCACCCTCGGCACCTCCAACGCCTTCATCTGGGAATTCAACTTCAAAGATTTCGACGTCGCGCGTGACGCCCACGCTCACGACTCTGTGGAGTTGCTGCGCCGCCAGGGCATCGATTTCGAGAAGAATCGCGATTTCGGGATTGACTCGTTCCGGTTCGCGGAGCTCATGATGTCGTCCGGTCTGGTCTGCGACGACGCCGTTAGTTGGGTGACTTTTCACAGCGCCTATGATTTCGGATATTTGGTGAAATTGATGACACATCGCACATTGCCAGAAGAATTAAGAGAGTTTCTGCGTCTGGTGAGGGTGTTTTTCGGAGACAGAGTCTTTGATGTGAAGCATTTGATGAGGTTCTGCTCAAACCTGCACGGTGGATTGGACCGTGTTTGTCAGTCGCTGAAGGTGGAACGTGTTATTGGAAAAAGTCATCAGGCTGGTTCTGATAGTTTGCTCACTCTGCACGCGTTTCAGAATATCAGAGAGAATTACTTTGACAAGGCTGACGGACTTGTTCAGTACGCTGGTGTCTTGTATGGTTTGGAGGTTTTCTGA 1515 0.4917 MRKDVSMRLVLIEEASTDDRDRENMCDYAIPLFLRYFEFRYFDQIHNTPSSMTLGSSGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQRRFTMEDILTQLKKEMAASHNRKLVQPPEVAFSLPLRIFFFFFSSNPKSWPRKLTTKVIELNTLKAMAQSHGSILTRSVWSSNLESEFDLIRSVIDSFPLISMDTEFPGVVVRPDAGDPSFRHRQPVAHYAVLKANVDRLHLIQIGLTLSDNAGNLPTLGTSNAFIWEFNFKDFDVARDAHAHDSVELLRRQGIDFEKNRDFGIDSFRFAELMMSSGLVCDDAVSWVTFHSAYDFGYLVKLMTHRTLPEELREFLRLVRVFFGDRVFDVKHLMRFCSNLHGGLDRVCQSLKVERVIGKSHQAGSDSLLTLHAFQNIRENYFDKADGLVQYAGVLYGLEVF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01836 504 Pfam Ubiquitin-conjugating enzyme 94 183 IPR000608 -
Gma03g01836 504 Gene3D - 227 503 IPR036397 GO:0003676
Gma03g01836 504 Pfam CAF1 family ribonuclease 243 368 IPR006941 -
Gma03g01836 504 SMART ubc_7 67 227 - -
Gma03g01836 504 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 230 503 - -
Gma03g01836 504 SUPERFAMILY UBC-like 62 193 IPR016135 -
Gma03g01836 504 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 64 220 IPR000608 -
Gma03g01836 504 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 230 503 IPR039637 GO:0004535|GO:0030014
Gma03g01836 504 SUPERFAMILY Ribonuclease H-like 231 502 IPR012337 -
Gma03g01836 504 Gene3D Ubiquitin Conjugating Enzyme 51 196 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01836 Gma-Chr3 44371600 44379952 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01836 K12581 - gmx:100790027 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01836 03 44371600 44379952 Gma03g01836 03 44371600 44379952 ECH
Gma19g01877 19 47993541 47994721 Gma03g01836 03 44371600 44379952 GST