Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01819 atgaagtcacgaccagtatcggagCAAGAGTTCTTGCCAGAGGTAACCGCTCTAGTGACGATTTGCGGAGCAAGCGGTTTTGTCGGAGGAATTTCGACACCACCATATCcgtcgtgGCAAGCTTGGGGGAGCCTTGACGCACTCATAGGGCGTTTACGTGCATCTTTTGAGGAAAATGGAGGGAAGCCTGAGGCAGAACTTTTTGGAGCACGACTTGTGAGTCTCTACCTTTGTGAGGCTAATTTGCCGGTGCTTTCATCACTTTTCTGGCCTACCCACTACCATTTTGACCTTGTTCTGTTTCCTCAGCAAGCCTTGCCTTTTCCATTCTCCTTTCTTCCTCCAGTTTCCACTTCTGAAGTTCCACTGCTTTCTATTGTTTTTGCAGGATTGTCCCTTGCTTTCATTTGGAATGGAATAAAAGTGATCCAAAGGTTCGTGGCCACGGTTGAACTAGACAACAACAAGGTGTTGATATTGGATATTAGGGTACCAATCACACCATTTATGGGGTTAAGTAAACATAGGACGTGTGTTAATGCTATGTCATGGTCCCCAGATTTTGGACGACATTTGTGCTCTATTAGTGATGATGCAAGGGTCTTCATTTGGGAGGTGATGGACACGGGGTTCCGTTCAGGGAATGTCGAAGAAGCAAAAAGGGGGTGGGTCAAAATTCCGCCGGAGAAAATCTTTGTTCGGTGTTTGCAATCGGGAGAGAGAGCAAGGTCCCTTCTCAAGGATGGCGATGACTGTACACGCCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCTGGCATGTGCAATATATAACAATTGGTGGCCAATGTTATCAGCTCTGATGTATGTGCTGGTTCCTATGCCTTGCTTATTCTTTGGAGGTGGATCCACTCAATTTCTAATGAGCCGTGATGGTGGTGGTTGGATAGATGCTGCAAAATTTTTGACTGGAGCATCAGCTGTTGGGAGCATAGCCATTCCTATAATCCTCAAGCACGCTCATATGATTGAGACAGGCGCGATGCTCATTGAACTTGTATCGTTCTTCATTTTTATATGTACTGTTTTATGTTTCCACCAAGCCGGCCTTGATGATGATTGGTAA 1122 0.4412 MKSRPVSEQEFLPEVTALVTICGASGFVGGISTPPYPSWQAWGSLDALIGRLRASFEENGGKPEAELFGARLVSLYLCEANLPVLSSLFWPTHYHFDLVLFPQQALPFPFSFLPPVSTSEVPLLSIVFAGLSLAFIWNGIKVIQRFVATVELDNNKVLILDIRVPITPFMGLSKHRTCVNAMSWSPDFGRHLCSISDDARVFIWEVMDTGFRSGNVEEAKRGWVKIPPEKIFVRCLQSGERARSLLKDGDDCTRLAGLAFMFSASILLQILACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLMSRDGGGWIDAAKFLTGASAVGSIAIPIILKHAHMIETGAMLIELVSFFIFICTVLCFHQAGLDDDW 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01819 373 Gene3D - 121 245 IPR015943 GO:0005515
Gma03g01819 373 ProSiteProfiles ALOG domain profile. 1 96 IPR006936 -
Gma03g01819 373 PANTHER RH04491P 255 372 - -
Gma03g01819 373 SUPERFAMILY WD40 repeat-like 145 212 IPR036322 GO:0005515
Gma03g01819 373 SMART WD40_4 165 205 IPR001680 GO:0005515
Gma03g01819 373 Pfam Vacuolar protein sorting 55 256 365 IPR007262 -
Gma03g01819 373 PANTHER LEPTIN RECEPTOR-RELATED 255 372 IPR007262 -
Gma03g01819 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 206 - -
Gma03g01819 373 Pfam ALOG domain 32 79 IPR006936 -
Gma03g01819 373 ProSitePatterns Trp-Asp (WD) repeats signature. 192 206 IPR019775 -
Gma03g01819 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 206 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01819 Gma-Chr3 44226806 44232441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01819 251 372 EF-hand Containing Proteins AT1G32410 54.098 2.17e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01819 - - pvu:PHAVU_001G192100g 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01819 03 44226806 44232441 Gma03g01819 03 44226806 44232441 ECH
Gma19g01861 19 47812577 47817960 Gma03g01819 03 44226806 44232441 GST