Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01538 ATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCGCAGGTTGGTTCCTACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCGAATCTTGTTCACCAGTTTTACTCCGATTCCAGCAGCATGATTCGCGTCGACGGAGATTCAGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTATCGTTACTGAATTTTACTACGATTGAAATCAAGACAATTAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGTCTCAGGTTTTGTGAAGATAAAGGATATCAGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTACATTGATGATGAAGTAACGTACCCAAATCTGGTACCAGTGGCATCTGAAACCATTGACACACAACCACATCTTTCTGCTTCACTTGCTGAGCCACCAGTTTCAGACTACGGTTTGGAGGAAGAAGCCAGGGAATATGTCAACTCAGTTCATATAGATGATGATCCAGTGGACGAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGAGGAGGAAACTCCCGTACAGGAGGCATCTCCGCCAATTCATAGCATTGCACACACTGTCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCAGCCAGTGTTGTCAGCTGCTCCACGGTATGCTCCACAACATTCTTTTAAAAGTGCCCCACCTCCTTCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGTTCCTGAGTCAGGGATTGAGGCCGCAGAAGAAGGCTATGGACTAGAAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCCGCTAATGTTACTGAAGCAGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCCTGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTGGAATTTGAAGACATTGTTGGTGTTCAAAATGCACTTCAGGCTTCTCCAATCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTAATCAGGATAGTTCAGACTACACCAGACTAAGAGGCGATGGTTATCTTCAGCGTGGTTCCCGATGA 1359 0.4592 MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMVSGFVKIKDISGKRKFVQTFFLAPQEKGYFVMNDMFHYIDDEVTYPNLVPVASETIDTQPHLSASLAEPPVSDYGLEEEAREYVNSVHIDDDPVDEYSLPEHQQQLQEELETEIVEEETPVQEASPPIHSIAHTVQEPPVALVEESFEEPPKKTYASILRVSKGQPVLSAAPRYAPQHSFKSAPPPSELNHVAQPAVQQSSSASMYVPESGIEAAEEGYGLEEEDEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIVGVQNALQASPIQLAGRQVYIEERRPNSVGAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGNQDSSDYTRLRGDGYLQRGSR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01538 452 PANTHER GB|AAD20086.1 9 446 - -
Gma03g01538 452 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 446 IPR039539 -
Gma03g01538 452 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Gma03g01538 452 CDD RRM_SF 320 391 - -
Gma03g01538 452 SMART rrm1_1 319 391 IPR000504 GO:0003723
Gma03g01538 452 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Gma03g01538 452 MobiDBLite consensus disorder prediction 395 452 - -
Gma03g01538 452 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Gma03g01538 452 CDD NTF2 10 130 IPR018222 -
Gma03g01538 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 403 IPR000504 GO:0003723
Gma03g01538 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 383 IPR000504 GO:0003723
Gma03g01538 452 Gene3D - 303 446 IPR012677 -
Gma03g01538 452 Gene3D - 5 133 - -
Gma03g01538 452 SUPERFAMILY RNA-binding domain, RBD 314 425 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01538 Gma-Chr3 41631288 41637898 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01538 - - gmx:100787900 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01538 03 41631288 41637898 Gma03g01538 03 41631288 41637898 ECH
Gma19g01592 19 45302038 45309633 Gma03g01538 03 41631288 41637898 GST