Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01408 ATGGAAGCAACGCGATTCTCCCCTAATCACTTTTATCCACACCGCTTCCAAACGAAACCCAACGCACTCAGAGAAAGAAGATACGTAAAATGTATCAACGGAATTGGAGCTAGGGTTTCCCTTTTCACAAATCCTGCATTCAACGCATCGAACCGGTCTTTGTTTCCGAAGCTGAACCGGACTCTCTCCGTTAGCTTCTCCGACCGGCTCCGAGGTGATTATGCACGCGTTGATGAGGAAGTTGTTCCGGCGACACGCGGCGATGGGGGGGAAGCGGTTATTTCGTCGTCGTCTCCGAGTGCTAACAGCTCGGGAACCCTGCAATTGAAACCTTTGATGTTCAGGAACAGGTTTCTGAACTTTGCGCGGTTGGGTTCTGTGATTAACGGCGCCGCGGAATCGTTTTTTAAGAGCGAGATTCGGAGGAGGCTGTTCGTGACGGCCATGTTGATTGTGATTAGTCGCGTCGGTTATTTTATTCCTCTTCCCGGGTTTGACAGAAGGTTGATACCGGAAGACTACTTGAGCTTTGTCGCAGGATCATCCGTTGATGAACTTGGTGACTTCACTGCTGAGCTCAAGCTATCTATTTTCCAGCTTGGAATCAGTCCTCAGATAATAGCATCCATTATTATGCAGGTACTCTGTCATGTTGTCCCTTCTTTAGTAAAGCTACGGAAAGAAGGTCTGGATGGGCATGAGAAAATTAAGAGTTATATATGGTGGATGTCATTTGGCTTTGCAATTCTGGAAGCTTTAATAGTTGCTTGCTACTCACTTCCATATTCAATTTATGCTGCCACTTATAGGGTCAAGCATGTAATGGTGACATCTATTTTATTGGTTTGTGGTGCAATGACTATTACATGGATATGTGATACCATATCAGAATCTGGATTTGGTCAAGGTTCGTCTCTAATCATATGTGTGGGAATACTTACGGGATATATGGAGACATTATACAAAATGCTTACTCAGCTTTCAGTGAGTGCTGTAAGTTGGTGGCCATATGTGCTTGCTGTATTGGGTATCTTTACCATCGTTACTATGTGGGCAGTTGTAGTAACTGAAGGTTGTAGGAAAGTAAAGCTGCAGTACTATGGTTTTAAACTTGCTTCTGCTGCAAGAGAGCACTCACCTATTACTGAAGTGGAGCCGTATATTCCTTTCAATATTAATCCAGCAGGGATGCAACCTGTTCTTACCACCTCTTACCTCTTGGCATTTCCAAGCATTCTTGCAAGTCTGCTGAGGTCACCTTTTTGGGAGCATGCCAAGGAAATGTTGAACCCTGAAACTTCTGTTGGTGCTGAGCCATGGGTTTACTATTCCATATATGCTTTTTTTGTCTTCCTGTTCAATATATTCGATATCGCTAACATGCCAAAGGAAATTGCTGACTATTTAAATAAGATGGGTGCGAGAATACCAAACATAAAGCCTGGGAAGGCTACCATAGAGTACCTCTCCAAGGTTCAGGCATCCACACGATTTTGGGGGGGGCTATTGTTAAGTGTTCTGGCCACTACATCAAGTGTTCTTGACCACTATTTACGGCGTGTCAATGCTGGATTTGCTATTGGTTTTACATCAGTTCTAATTATTGTCGGTTCCATTATTGAACTCAGAAGATCGTATCAAGCATATAATGTGATGCCAAGCTTGAGCAATGCTTTGAGACGATATGGTGTATGA 1695 0.4372 MEATRFSPNHFYPHRFQTKPNALRERRYVKCINGIGARVSLFTNPAFNASNRSLFPKLNRTLSVSFSDRLRGDYARVDEEVVPATRGDGGEAVISSSSPSANSSGTLQLKPLMFRNRFLNFARLGSVINGAAESFFKSEIRRRLFVTAMLIVISRVGYFIPLPGFDRRLIPEDYLSFVAGSSVDELGDFTAELKLSIFQLGISPQIIASIIMQVLCHVVPSLVKLRKEGLDGHEKIKSYIWWMSFGFAILEALIVACYSLPYSIYAATYRVKHVMVTSILLVCGAMTITWICDTISESGFGQGSSLIICVGILTGYMETLYKMLTQLSVSAVSWWPYVLAVLGIFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREHSPITEVEPYIPFNINPAGMQPVLTTSYLLAFPSILASLLRSPFWEHAKEMLNPETSVGAEPWVYYSIYAFFVFLFNIFDIANMPKEIADYLNKMGARIPNIKPGKATIEYLSKVQASTRFWGGLLLSVLATTSSVLDHYLRRVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01408 564 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC 118 563 - -
Gma03g01408 564 Gene3D SecY subunit domain 128 554 IPR023201 -
Gma03g01408 564 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 118 563 IPR002208 GO:0015031|GO:0016020
Gma03g01408 564 SUPERFAMILY Preprotein translocase SecY subunit 124 549 IPR023201 -
Gma03g01408 564 Pfam SecY 196 542 IPR002208 GO:0015031|GO:0016020
Gma03g01408 564 PRINTS Preprotein translocase SecY subunit signature 144 162 - -
Gma03g01408 564 PRINTS Preprotein translocase SecY subunit signature 195 215 - -
Gma03g01408 564 PRINTS Preprotein translocase SecY subunit signature 236 259 - -
Gma03g01408 564 PRINTS Preprotein translocase SecY subunit signature 271 296 - -
Gma03g01408 564 PRINTS Preprotein translocase SecY subunit signature 297 320 - -
Gma03g01408 564 PRINTS Preprotein translocase SecY subunit signature 395 414 - -
Gma03g01408 564 PRINTS Preprotein translocase SecY subunit signature 440 462 - -
Gma03g01408 564 PRINTS Preprotein translocase SecY subunit signature 528 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01408 Gma-Chr3 40226406 40236425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01408 50 564 Miscellaneous Gene Families AT2G31530 74.952 0.0 795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01408 - - gmx:100803256 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01408 03 40226406 40236425 Gma03g01408 03 40226406 40236425 ECH
Gma19g01471 19 43947726 43952521 Gma03g01408 03 40226406 40236425 GST