Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01393 ATGACAAGTCTCGCGCCACGCTTCTCATTCTCAGTGATTCCTGGGAGTCACCACAGCAAACCCAAATTCTCTTGTTTTCACGAACCCTTTATCCAAAGGAAGCACCTTTGGCCCAAACTTGGATTGCAAAACCCCATTTCCCCCTTTTCTCGGAACCCCACTTCTTCAAAATTGTGTGCCACGTCACGCTTGTCCATTGAGGAAACGGAGCAGCAACTTGGAACCTTGAGCCGACCCGAATACCTAAAAGGTTCATCGGCGTATTTGTTTAGGACTGAAACTGGTGGCGGGTTGGTGAAAGTTTATGTCACAAAGAGAAAAGATAGGTATTTTGTTTACACTGAGATTTCATCGTTGGATATAAGTGGTAGTGTTGGTGAAACGCTTTTGTTGTGTTGGGGTGTGTATAGAAGTGATTCATCGTGTTTTGTGGATCTGGATACGATAGGTTTGAGAGAAAATGCGGCGACGGGGATGAATGTTAGTCCCTTGGTGCAAAATTCTGATGGAAACTTTGCAGTTGAATTGGAATTTGATGCAAAGCATGTTCCTTTGTACTTGTCGTTTTTCTTGATGTCGTCTTTGGATGCAGGGATGGAGATTAGAAGCCATAGGGGAACGAATTTTTGCGTGCCGGTTGGGTTGCTTCCGGGGTACCCGGGTCCTTTGGGGCTCTTTTGTTCTCCTGATGGGTCTGTGAATTTTGCTATTTTCTCGAGACGTGCTGAGAGTGTGGTTTTATGCTTGTATGATGAGAATGACATGGAGAAGCCTGCTTTGGAGCTTGATTTGGATCCTTATGTGAATAGGACAGGTGATATCTGGCATGTCGCGTTTGAGAGTGCCAAGGGTTTCATGAGCTATGGTTATAGCTGCAGAGGGGGTGTTCTTAAGAGGAACAAGGATGATGGTTTTGCTGAGCACGTTGTTTTGGATCCGTATGCTAAGATTGTTGGGAATTCTTATCCTGATGGTGTTGGATTTGTGAAGAATCTTGGATGGTTGGGGAAGGAACCTGATTTTGATTGGGGTGGTGATTGTCATCTGGATTTGTCCATGGAGAAACTGGTGGTTTATAGGTTGAATGTGAAGCGCTTTACGCAGCACGAGTCCAGCCAACTTCCGAGTGGTTTAGCTGGGACCTTTACTGGTTTGGCTAAGAAGGTTCAGCATTTTAAAGATCTAGGAGTGAATGCCATTCTTCTGGAGCCGGTTTTCACATTTGACGAGAAAAAGGGACCATATTTTCCTAGCCACTTTTTTTCTCTGATGCACATTTATGGGCCATCTGGTGGTCCTGTATCTGCTATTGCCTCTATGAAAGAGATGGTTAAAACTATGCATGCCAATGGGATAGAAGTTCTTGTGGAAGTTGTTTTCTCCAATACCGCTGAGATTGGTGCTCTACAGGGAATTGACGACTCAACCTACTATTATGCAAATGGAGTTGGTGGTTTGAAGGGGCAGAGTGCTCTGAACTGTAACTATCCTATAGTGCAAAGTTTGATTCTGGATAGTCTTCGGCATTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCTTAAATGCTTCACACCTTCTGAGAGGATTTCATGGGGAGTACTTGACTAGACCTCCATTAGTTGAAGCTATAGCTTTTGACCCAGTACTCTCCAAGACTAAAATCATTGCAGATTGTTGGGATCCCCATGGCATGGTAGCAAAGGAAATTCGCTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTTTGTAACGATGTGAGGAACTTTTTAAGGGGTGAAAATCTTCTTAGCAACCTTGCAACAAGACTTTGCGGGAGTGGGGACATATTTTCTGGTGGAAGAGGTCCCGCATTCTCTTTTAATTACATTGCCAGAAATTTTGGAGTTTCTCTTGTGGACTTGGTTAGCTTCAGCAGTACAGATGAATTAAGTTGGAATTGTGGAGAAGAAGGACCTACAAACAACACTGCTATTCTTGAAAGACGACTCAAGCAAATCCGTAATTTCCTCTTCATCTTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGGCCAGTCTTCTGGTGGTTTTACTGCATATGATGGTATAAAGCCTTTCAGTTGGAGTTCTTTGAAAACAGGCTTCGGTAAACAAACCTCACAATTCATTTTCTTTTTAAGTTCATTTAGAAGGAGGAGAAGTGATCTTCTTCAGAGGATGAGCTTCTTAAAAGAAGAAAACATTGAATGGTATGGAAGTGATGGGGCCCCACCAAGATGGGAAGACCTATCCTGCAAGTTCCTAGCCATGGCTTTGAAGGCCGAAGAAAAGGAGTTTCTAGAGAGCTCTGTATCTTCTGATATATCCGGCGATCTATTTATTGCTTTCAATGCAGCTGGTCATCCAGAAACTGCAGTTTTACCCTTGCCTCCAGAAGGAATGTTATGGTACCGTTTAGTTGACACGGCTCTTCCATTTCCTGGCTTTTTCTCGGCCAGTGGTGAAGTTGTTCCTGAGCAGACAGCAGCGATGCGTTCACCTCCCCCGCAAAGTCCATTCTTAACAGATTTTCATCAGGTTCAGGGGGCGCTCGAAATGGTCTTTTTGATGCTTACACCACCAGTCAAGATTGTAGACTAA 2646 0.4373 MTSLAPRFSFSVIPGSHHSKPKFSCFHEPFIQRKHLWPKLGLQNPISPFSRNPTSSKLCATSRLSIEETEQQLGTLSRPEYLKGSSAYLFRTETGGGLVKVYVTKRKDRYFVYTEISSLDISGSVGETLLLCWGVYRSDSSCFVDLDTIGLRENAATGMNVSPLVQNSDGNFAVELEFDAKHVPLYLSFFLMSSLDAGMEIRSHRGTNFCVPVGLLPGYPGPLGLFCSPDGSVNFAIFSRRAESVVLCLYDENDMEKPALELDLDPYVNRTGDIWHVAFESAKGFMSYGYSCRGGVLKRNKDDGFAEHVVLDPYAKIVGNSYPDGVGFVKNLGWLGKEPDFDWGGDCHLDLSMEKLVVYRLNVKRFTQHESSQLPSGLAGTFTGLAKKVQHFKDLGVNAILLEPVFTFDEKKGPYFPSHFFSLMHIYGPSGGPVSAIASMKEMVKTMHANGIEVLVEVVFSNTAEIGALQGIDDSTYYYANGVGGLKGQSALNCNYPIVQSLILDSLRHWVTEFHIDGFSFLNASHLLRGFHGEYLTRPPLVEAIAFDPVLSKTKIIADCWDPHGMVAKEIRFPHWMRWAEINTNFCNDVRNFLRGENLLSNLATRLCGSGDIFSGGRGPAFSFNYIARNFGVSLVDLVSFSSTDELSWNCGEEGPTNNTAILERRLKQIRNFLFILFVSLGVPVLNMGDECGQSSGGFTAYDGIKPFSWSSLKTGFGKQTSQFIFFLSSFRRRRSDLLQRMSFLKEENIEWYGSDGAPPRWEDLSCKFLAMALKAEEKEFLESSVSSDISGDLFIAFNAAGHPETAVLPLPPEGMLWYRLVDTALPFPGFFSASGEVVPEQTAAMRSPPPQSPFLTDFHQVQGALEMVFLMLTPPVKIVD 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01393 881 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 222 315 IPR004193 GO:0004553|GO:0005975
Gma03g01393 881 CDD AmyAc_plant_IsoA 352 740 IPR044096 GO:0019156|GO:0019252
Gma03g01393 881 Gene3D Glycosidases 337 747 - -
Gma03g01393 881 Gene3D - 748 856 IPR013780 -
Gma03g01393 881 Pfam Alpha amylase, catalytic domain 380 464 IPR006047 GO:0005975
Gma03g01393 881 PANTHER GLYCOGEN DEBRANCHING ENZYME 64 846 - -
Gma03g01393 881 Coils Coil 728 748 - -
Gma03g01393 881 CDD E_set_GDE_Isoamylase_N 222 360 IPR044505 -
Gma03g01393 881 Gene3D Immunoglobulins 210 326 IPR013783 -
Gma03g01393 881 PANTHER ISOAMYLASE 2, CHLOROPLASTIC 64 846 - -
Gma03g01393 881 SUPERFAMILY Glycosyl hydrolase domain 747 838 - -
Gma03g01393 881 SUPERFAMILY E set domains 217 347 IPR014756 -
Gma03g01393 881 SMART aamy 360 732 IPR006047 GO:0005975
Gma03g01393 881 SUPERFAMILY (Trans)glycosidases 339 738 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01393 Gma-Chr3 40039840 40043181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01393 56 839 Glycoside Hydrolase AT1G03310 57.053 0.0 893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01393 K01214 - gmx:100797949 1707.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01393 03 40039840 40043181 Gma03g01393 03 40039840 40043181 ECH
Gma19g01456 19 43759605 43763008 Gma03g01393 03 40039840 40043181 GST