Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01200 ATGATAAATATGGATACTTTGCTCAAAACACCCAACAAGCTTGAGTTTTTGCACCCACTTCACGGTTACTCGGAAAAATTGAGCAGTTCAGGTTCCTCTAGGGTGCAAAATCAGTATTTTGGGTTTGGTTCCAAGAAACCAACTGTGAGATGGGGTAAATGTGGTAACTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCCTCAAAGGGTGCTATGGTTGATCTTGCTGTTGTGGGAGGGGGCCCTGCAGGGCTTGCAGTTGCACAGCAGGTTTCTGAGGCGGGGCTTTCGGTTTGTGCCATTGATCCAAACCCTAGATTGATTTGGCCCAATAATTATGGGGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGATTGCCTTGACACCATTTGGTCTGGCGCGGTTGTCTTCATTGACGACAAAACAAAGAAGGATCTAGATAGGCCTTATGGGAGGGTCAACAGGAAGCTGCTGAAGTCCAAGATGCTGCAGAAATGCATATCGAATGGCGTCAAGTTTCACCAAGCGAAAGTTATCAAGGTTATTCATGAGGAGGCCAAATCTTTGTTGATTTGTAATGATGGTGTCACTGTTCATGCCACTGTGGTTCTCGATGCAACTGGCTTTTCGAGATGCCTTGTTCAGTATGATAAACCGTATAATCCGGGATACCAAGTTGCTTATGGGATTTTGGCCGAGGTTGATGAACACCCATTTGATGTAGATAAAATGCTTTTTATGGACTGGAGAGATTCACATCTGGACAATGACATGGAACTGAAGCAGAGAAATAGTAGAATACCCACTTTTCTATATGCGATGCCCTTTTCATCCACTAAGATATTTCTTGAAGAAACTTCTCTTGTGGCACGCCCTGGGTTGCGAATGGATGATATACAAGAAAGAATGGCTGCTAGGTTGAAACACTTGGGTATTAGAGTGAAAAGCATTGAAGAAGATGAGCATTGTGTCATTCCAATGGGTGGCCCCCTCCCAGTTCTCCCCCAAAGAGTTGTTGGAATTGGCGGTACCGCAGGAATGGTGCATCCTTCAACAGGGTATATGGTAGCAAGGACCCTAGCTGCGGCTCCTATTGTTGCTAATTCTATTGTTCAGTGCCTTGGTTCTGATAGAGGTTTTTCAGGAGATGAAATATCTGCACAAGTGTGGAAAGATTTATGGCCTATCCAAAGGAGGCGACAAAGGGAGTTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCAGGCACAAAGAGATTTTTTGATGCGTTTTTTGATCTGGAACCTCATTACTGGCATGGATTCTTATCATCAAGACTGTTTCTTCATGAGCTCTTATTTTTTGGACTCTCTCTATTTTCTTATGCTTCTAATACATCTAGGGTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAACATGATCAACAACTTGGTAAAAGATACAGAATAA 1524 0.4311 MINMDTLLKTPNKLEFLHPLHGYSEKLSSSGSSRVQNQYFGFGSKKPTVRWGKCGNLRASSSALLELVPEFKKENLDFELPLYDSSKGAMVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTIWSGAVVFIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEEAKSLLICNDGVTVHATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDNDMELKQRNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQERMAARLKHLGIRVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQCLGSDRGFSGDEISAQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTKRFFDAFFDLEPHYWHGFLSSRLFLHELLFFGLSLFSYASNTSRVEIMAKGTLPLVNMINNLVKDTE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01200 507 Gene3D - 88 431 IPR036188 -
Gma03g01200 507 PANTHER LYCOPENE BETA CYCLASE, CHLOROPLASTIC 9 507 - -
Gma03g01200 507 TIGRFAM carotene-cycl: lycopene cyclase family protein 92 487 IPR010108 GO:0016117|GO:0016705
Gma03g01200 507 Pfam Lycopene cyclase protein 92 484 - -
Gma03g01200 507 PANTHER UBIQUINONE BIOSYNTHESIS MONOOXYGENASE COQ6, MITOCHONDRIAL 9 507 - -
Gma03g01200 507 SUPERFAMILY FAD/NAD(P)-binding domain 90 474 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01200 Gma-Chr3 37793258 37795228 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01200 K06443 - gmx:100783830 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01255 19 41572154 41573677 Gma03g01200 03 37793258 37795228 GST