Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01115 ATGACTCTTGTTCTTCGTAATTCCTCGCCCACCACCATGGCCAACTTCTCCTCCAACCAGATTCGCTTTCTCCTCAGTTCTTTGAACGAAGTCAACTTTGACTCCGTTTTCCGCCAACTCTCTCAGTTCACAGAATTTGGAACCGCTGGATGCATTTTGCTGCTTCAAACTTGCTTGGATCACTATGACTATGTCAGAAGAGATATGGAAGACACGCAGCATGAGCCAATTCTTGGGGCAGTCATTAAGCACCTCTTGGGCAAACTAAACTTCAGTACAGTGTTTTCTGAGTCAATGAGGAATATAGAAATTAATGAAAGCTTTTTAGAAAGTTTTTGTAACAGATTGCAGTTATCTTTATTGGAAAAAATTGTCATCGGTCTTGCTTTATCTGATTCTGAGAATCCTGATGCCAGGCTGTGTGGCAAAATTTTCTCCATAGCTCGGATTGAGGAATTGTGTGCCAACCCTAGTTCTTTGAGTTACCATGAGCAAATTCACAATATTATCATGTTCCTAAAGCAGTCTGAGGGTCTTTCCAAGCATGTGGATTCCTTTATGCAGATATTGTCACTTGTCCAATTCAAAGATACACCACCTTTTTTCTTGACTCGATTGCTTCCTGATGAGATGAACGAGGCTGATTTTTTAAGGTTGAATATGGAGTTGTTACATGACAGTGGAGAAAATGATTTTGATGCTATTTTAGCAGACATACAGAAGGAAATTAACATAGGAGATATCGTGAAGGAACTAGGCTATGGTTGCACGGTTGATGTCTCAGGGTGCAAGGAGATACTCTCGCTCTTCTTACCTTTAACTGATAATGCGCTATCTAAATTGCTTGGCGCTATTGCTTATAGTAATACTGGGCTGGAGGACAACCAGAACACATACTTAACATTTCGTGCAGCCCATGGATACAATGTGTCTGAGTTGCCGCTTCTGAACTCTTGGAATATTGATGTCTTGATAGATACAGTGAAGCAACTAGCACCACAAACCAATTGGATACGCGTTATAGAAAATCTTGACCATGAAGGGTTTTTCCTTCCTTGTGAAGAAGCATTCTTTTTTCTCATGTCAGTATACAAACATGCCTGTAAGGAACCTTTTCCTCTCCATGCCATATGTGGATCTGTTTGGAAGAACACTGAGGGTCAACTGTCTTTCCTTAAATATGCTGTATCAGCACTACCAGAAATGTTTACCTTTGCACGCTCAGGAAGACAGCTGGCATATGTTGATGCAGTTAATTACCACAAGCATCAAAATGAACATGCAAATAATGCATGGCTGTGTCTTGACCTTTTAGATGTCCTCTGCCTGCTAGCTGAGAAGGGTCACACCAGCATTGTTCGATCCATCCTTGATTATCCCCTTAAACACTGTCCTGAAGTCTTGCTTCTTGGGATGGCACATATAAATACTGCCTACAACCTCTTGCAACGGGAAGTATCTCTGATTGTGTTTCCCATGATAGTAAAAAGTCCTGCAGGCAGTGGGATCATTCTGCAGCTTTGGCATGTTAACCCCAATCTGGTCTTGAGAGGGCTTATGGATTCTCAAAACAATGATGCAGACAGCATTATAAGAATTGTGGACATCTGCCAGGAGCTAAAGGTTGTTCTTAAATCTCATACTGACTTAGTTACCTCTAGACAACATTCTGAGGAGTTGGAGAGGCTGCATATATCTATAATAGATTGTTCTCAGTTACATAGCGCAGTCAGCACCTCCTCAATGCCTTCGTCTCGTGGATTTGTTTGTCCTTCCCGTGGAGCTACTTCAATCAGGTTTGGATCTGCCTTGAACATTGAAACGTTGGCTGCTGCTGCTGAGAAAAGAGAAACTCCTATTGAGGCTCCAGGGTCAGAGGTTCAGGACAAGATATCACTTATGATTAATAATACTTTTGCGGCTAACATTGATTCTAAAGCAAAAGAGTTCACTGAAATTTTGAAAGAGCAGTATTATCCTTGGTTTGCACAATATATGGTTATGAAAAGAGCAAGCATTGAGCCAAATTTTCATGACTTGTACCTGAAATTCCTGGATAAAGTTAATTCAAAGGCTTTGAACAAAGAGATTATCCAGGCAACTTATGAAAATTGCAAGGTTCTTTTAGGATCAGAGCTCATAAAATCAAGTTCAGAGGAACGCTCTTTGCTTAAAAATTTGGGCAGCTGGCTTGGAAAGTTAACAATTGGCCGGAATCAGGTTTTGAAGGCTCGTGAAATAGACCCAAAATCTTTGATTATAGAGGCATATGAGAAGGGGCTAATGATTGCTGTTATTCCatttatatcaaagATCCTCAAATCATGCCAAAGCAGTATTGCATATGAACCTTCTAATCCTTGGACTAAGGGCATTTTGAGATTGCTTGTTGAAATTTATTCAATGCCAAACCTGAAAATGAACCTCATGTTTGACATAGAGGTTTTGTTAAAACATCTTGGTGTAGATATGATGGATGTCACACCAACTTCCCTCCTGCTGAAGGATAGAAAAAGAGAAATGGAAGGAAATCCTGATTTCTCTAATAAAGATGTCGGGGCATCATCAAAAATGATTATTGATCTAAAATGTGGCCCTGTACCTCCAGTAAATGAAGCTGAATTACCACTTGTAGTCACCAATCCATCCAATACGGGGGCTCATCCACATGTAGTGTCTCAGTATGCTGGTCCTCTTCATATTTCCTCGGGAGCATTGATGGAAGATGAAAAGTTTACACCTCTGGGATTGTCTGATCAACTTTCCTCTGCTCAAGTACTGTTACAAGCAACTCCTGCCTCAGCTCCTATTTCTATTAGCCGGCTTCCAATACAGATACCTGATATTGGGACTCGTGCTATTATCAACGAAAAACTTGGTGGTTTTGGGTTGCAAATGTATTTTAATAGTGTGGTACCCATTGCAATGGACAGGGCTATCAAAGAGATAGCATCTAGTAGTTTTGTTCAGAGAACTGTTATCATGGCAACAAAAACAACCATGGAGCTTGTTTTAAAGGATTATGCTATGGAATCTGATCAGACGCGTATATTAAAGGCAGCACACTTGATGGTTACTAGTCTTGCTGGGAGTTGGGCTCATGTTACATGCAAAGAACCATTATGGGTATCAATATATAGTCAACTGAGGAATTCACTTCAAAACTTAAATATTACTAATGAAATTTTGGAACAAGCTATGCAACTTGTCACCAATGATAATATTGATCTGGGATTTGCAGTCATTGAACAGGTTGCTGCTGATAAGGCAAAAAACACCATTGATACAGAGATTACTCAACAACTCTTTTTGAGAAGGAAGCATCGAGAAGGTTTCAGTTCTACATTTTTTTATGCAAACAAGGAAGAATTCAAAGGGGTAGATTCTGTTGAACCAGATCCTTCTGGGTTCTGCAAGCAGGTTGCCGTGTTGTTTAAAGAATGGTACAGGATATGTGAATTTCCTGGTGCCAATGATACAGCTTCAGCCCACTTCATCTTACAATTGCATCAGAATGGGCTGCTTAAAGGGGATGATGTTACAGATCACTTTTTCCGACAATTGATGGAACTAGCTATTGCACATTGCTTATCCACTGAGGTGATTAATTTGGGGTCACTGCAATCTCAACCACCGACAATGTCATTTCTTGCAATTGATATTTATGCAAAGCTTGTCTTCTCAATCTTGAAGGGATCAAACGAACTTGTTCTTCTTTCCAAGATTATGGCAGTTACTGTCCGATTCATTATAAAAGATGCAGAGGAGAAGAATGCCTTGTTTAATCCAAGGCCAGTTTTCAGATTATTCATCAACTGGCTTCTAGATCTTGGTTTGCTAGAGCCTGTTACTGATGGTGCAAATCTCCAGATTTTGACTGTTTTTGCCAATGCATTTCATGCTTTACAGCCGCTTAAAGTTCCTGCATTCAGttttgcatggcttgagttgattagtcacaggagcttcatgccaaaaatgttgactggtaatggtcaaaaaggttggccttatatccaaaggttgcttgtagatctgttccaatttatggagccttttctgaggcATGCTGAACTAGGAGAACCGGTTCGTGTCCTCTATAAAGGCACACTTAGGGTGCTCTTAGTGCTACTTCATGACTTCCCGGAGTTTCTCTGTGATTATCACTTTACCTTTTGTGATGTTATTCCTTCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATGTCCGCGTAGTATGAGGCTGCCAGACCCATCTACTCCTAAATTGAAGATTGATTTGCTTCAAGAAATAAACCAATCGCCGAGCATTCTGTCGGAGGTTGATGCAGCACTTAAAGCAAAGCAGATAAAGACCCATGTAGATGAATACCTTAAGGCCTGTCCCCATCCCTCTTTGAATTGGTTTACAAGACAACCGAGTTGGTCATTTTTATCTGAACTGAAGTATAAGCTGCTTCTCTCACCAAATGAAGCAGCCTCTGCTGGGACTCGATACAATCGGCCATTAATTAATTCGCTTGTGCTATATGTAGGAATGCAGGCAATCCATCAGCTTCAGGAACGAACTCCCCATACACAAACATCAGCAAACGCTGTCCCCGTCGTAGCCTTATTTTCAGTTGATACTGCATTGGATATTTTCAAAACACTAATTGTGGACTTGGACTCTGAAGGGCGCTACCTTTTCCTAAATGCTATTGCCAACCAACTGCGTTATCCTAATACCAATACACACTATTTTTCCCTCCTCCTTCTGCACTTGTTTGAAGACTCAAACCTGGAAGTTATCCAAGAACAGATAACTAGAGTCTTGCTAGAACGCCTATTTGTTGAACGTCCTCATCCCTGGGGCATCCTCATTACTTTTTTGGAGTTGTACAGGAACCCTAGGTACAATTTCCGGAACCGGAGTTTCATAACGCCAGAGATTGAAAAACTTTTTGAGTCGGTGGTGTCTCGAGCAGGTCCAAAACCAGTGGATGAGAGCTGA 4998 0.3966 MTLVLRNSSPTTMANFSSNQIRFLLSSLNEVNFDSVFRQLSQFTEFGTAGCILLLQTCLDHYDYVRRDMEDTQHEPILGAVIKHLLGKLNFSTVFSESMRNIEINESFLESFCNRLQLSLLEKIVIGLALSDSENPDARLCGKIFSIARIEELCANPSSLSYHEQIHNIIMFLKQSEGLSKHVDSFMQILSLVQFKDTPPFFLTRLLPDEMNEADFLRLNMELLHDSGENDFDAILADIQKEINIGDIVKELGYGCTVDVSGCKEILSLFLPLTDNALSKLLGAIAYSNTGLEDNQNTYLTFRAAHGYNVSELPLLNSWNIDVLIDTVKQLAPQTNWIRVIENLDHEGFFLPCEEAFFFLMSVYKHACKEPFPLHAICGSVWKNTEGQLSFLKYAVSALPEMFTFARSGRQLAYVDAVNYHKHQNEHANNAWLCLDLLDVLCLLAEKGHTSIVRSILDYPLKHCPEVLLLGMAHINTAYNLLQREVSLIVFPMIVKSPAGSGIILQLWHVNPNLVLRGLMDSQNNDADSIIRIVDICQELKVVLKSHTDLVTSRQHSEELERLHISIIDCSQLHSAVSTSSMPSSRGFVCPSRGATSIRFGSALNIETLAAAAEKRETPIEAPGSEVQDKISLMINNTFAANIDSKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIIQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLKAREIDPKSLIIEAYEKGLMIAVIPFISKILKSCQSSIAYEPSNPWTKGILRLLVEIYSMPNLKMNLMFDIEVLLKHLGVDMMDVTPTSLLLKDRKREMEGNPDFSNKDVGASSKMIIDLKCGPVPPVNEAELPLVVTNPSNTGAHPHVVSQYAGPLHISSGALMEDEKFTPLGLSDQLSSAQVLLQATPASAPISISRLPIQIPDIGTRAIINEKLGGFGLQMYFNSVVPIAMDRAIKEIASSSFVQRTVIMATKTTMELVLKDYAMESDQTRILKAAHLMVTSLAGSWAHVTCKEPLWVSIYSQLRNSLQNLNITNEILEQAMQLVTNDNIDLGFAVIEQVAADKAKNTIDTEITQQLFLRRKHREGFSSTFFYANKEEFKGVDSVEPDPSGFCKQVAVLFKEWYRICEFPGANDTASAHFILQLHQNGLLKGDDVTDHFFRQLMELAIAHCLSTEVINLGSLQSQPPTMSFLAIDIYAKLVFSILKGSNELVLLSKIMAVTVRFIIKDAEEKNALFNPRPVFRLFINWLLDLGLLEPVTDGANLQILTVFANAFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGEPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSACPRSMRLPDPSTPKLKIDLLQEINQSPSILSEVDAALKAKQIKTHVDEYLKACPHPSLNWFTRQPSWSFLSELKYKLLLSPNEAASAGTRYNRPLINSLVLYVGMQAIHQLQERTPHTQTSANAVPVVALFSVDTALDIFKTLIVDLDSEGRYLFLNAIANQLRYPNTNTHYFSLLLLHLFEDSNLEVIQEQITRVLLERLFVERPHPWGILITFLELYRNPRYNFRNRSFITPEIEKLFESVVSRAGPKPVDES 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01115 1665 Coils Coil 1046 1073 - -
Gma03g01115 1665 Gene3D - 593 842 - -
Gma03g01115 1665 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 1131 1664 IPR040398 GO:0017148|GO:0030015
Gma03g01115 1665 Pfam CCR4-Not complex component, Not1 1283 1653 IPR007196 -
Gma03g01115 1665 Gene3D - 1414 1652 - -
Gma03g01115 1665 PANTHER OS10G0556600 PROTEIN 18 543 - -
Gma03g01115 1665 PANTHER OS10G0556600 PROTEIN 584 1120 - -
Gma03g01115 1665 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 18 543 IPR040398 GO:0017148|GO:0030015
Gma03g01115 1665 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 584 1120 IPR040398 GO:0017148|GO:0030015
Gma03g01115 1665 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 489 543 IPR032194 -
Gma03g01115 1665 Gene3D - 1124 1413 - -
Gma03g01115 1665 PANTHER OS10G0556600 PROTEIN 1131 1664 - -
Gma03g01115 1665 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 968 1109 IPR024557 -
Gma03g01115 1665 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 620 839 IPR032191 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01115 Gma-Chr3 36243658 36258675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01115 K12604 - gmx:100818196 2182.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01115 03 36243658 36258675 Gma03g01115 03 36243658 36258675 ECH
Gma07g00987 07 11004740 11024719 Gma03g01115 03 36243658 36258675 ECH
Gma03g01115 03 36243658 36258675 Gma07g00987 07 11004740 11024719 GST