Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01112 ATGAGGCTGGTGAGTGTGCTTCATGAGGAAGGGTTTAAGCCTGATTGCTTTGTTTACAACACCATTATGAAAGGGTATTGTCTGTTGAGTAGAGGGAGTGAGGTGATCGAGGTTTATAATAAGATGAAGGAGGAAGGTGTGGAGCCTGATCTTGTTACTTATAACACTTTGATTTTCGGGCTTTCGAAGTCGGGGAGGGTGACCGAGGCGAAGAAGCTGCTTCGTGTGATGGCGGAGAAAGGCTATTTTCCCGATGAGGTCACTTATACTTCGCTGATGAATGGGTTGTGCAGGAAGGGGGATGCGCTCGGGGCACTGGCGTTGTTGGGGGAGATGGAGGCCAAAGGGTGTAGTCCTAATGAGTGCACGTATAACACGCTGCTGCACGGCTTGTGTAAGGCGAGGTTGGTGGAGAAGGCAGTGGAGTTCTACGGGGTGATCAGGGCGGGTGGTCTGAAGCTTGATACGGCCTCTTATGGGACGTTTGTCAGGGCTCTGTGTAGGGAAGGGAGAATTGCCGAGAAGTATGAGGTGTTTGATTATGCAGTCGAGAGCGAGAGCTTGACGGACGCTGCTGCTTACTCTACATTGGAGAGCACTCTTAAGTGGCTCAGGAAGGCGAAAGAACAAGGGCTCACTGTTTAA 645 0.5085 MRLVSVLHEEGFKPDCFVYNTIMKGYCLLSRGSEVIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVTEAKKLLRVMAEKGYFPDEVTYTSLMNGLCRKGDALGALALLGEMEAKGCSPNECTYNTLLHGLCKARLVEKAVEFYGVIRAGGLKLDTASYGTFVRALCREGRIAEKYEVFDYAVESESLTDAAAYSTLESTLKWLRKAKEQGLTV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01112 214 Pfam PPR repeat family 84 133 IPR002885 -
Gma03g01112 214 Pfam PPR repeat family 14 63 IPR002885 -
Gma03g01112 214 Gene3D Tetratricopeptide repeat domain 79 213 IPR011990 GO:0005515
Gma03g01112 214 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Gma03g01112 214 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 213 - -
Gma03g01112 214 TIGRFAM PPR: pentatricopeptide repeat domain 18 50 IPR002885 -
Gma03g01112 214 TIGRFAM PPR: pentatricopeptide repeat domain 122 155 IPR002885 -
Gma03g01112 214 TIGRFAM PPR: pentatricopeptide repeat domain 87 121 IPR002885 -
Gma03g01112 214 TIGRFAM PPR: pentatricopeptide repeat domain 52 86 IPR002885 -
Gma03g01112 214 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Gma03g01112 214 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 213 - -
Gma03g01112 214 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 185 IPR002885 -
Gma03g01112 214 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 50 84 IPR002885 -
Gma03g01112 214 Gene3D Tetratricopeptide repeat domain 2 78 IPR011990 GO:0005515
Gma03g01112 214 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01112 Gma-Chr3 36195530 36196174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01112 16 199 Glycosyltransferase AT1G05670 32.796 3.17e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01112 - - gmx:100782321 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01112 03 36195530 36196174 Gma07g00990 07 11062403 11064993 GST