Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00898 ATGCAAAGGCTAATAATGACTTGTGTTTTGATTATTGGTTTTGTTTCACCATGTTTATGTTTGAGGTCGATGGTTGGAACCAAAAACACATTTTATAATGTGATGGACTTTGGTGCTCATGGCAATGGGAAATCTGATGATTCTCATGCATTTTCAAGCGCATGGCAACACACATGTGGAACACAAGGGACATCAACTCTAGTTATACCACCAAAAGGAGTATTCTTGGTGACGAACATAACCCTGAAAGGACCTTGCAAGGCCAGAAGTATTCATATTCTGCTTCAGGGGAAAATAGTTGCACCTGCCAAGGATGCATGGGCAAAAGGTCTGGATCCTTTGATTTTGATCTCAAACCTAAACGGTCTCACGATTGATGGAAGCGGAGGACAAATCGATGGCTTCGGTTCTACTTGGTGGAAATGCAGAAGTTGTCTTCGACCAAGGGTCATTAGTTTTGTATCTTGCAATGATCTTACTGTTCGTAAACTGAGCATCTCCAATAGTCCAAGAGCTCACATAACGATTGATGGTTGTAACGGTGCCATATTCTCTAATATCAATATTCATGCTCCTAGGAACAGCCCCAACACTGATGGATTTGATATTGCTTTTTCCAAAAATATCTTGATCGAAGATTGTACTATAGCAACTGGTGATGATTGTATTGCCATCAATGGAGGCTCCTCATACATCAATGCTACTGGAATTGCTTGTGGTCCTGGCCATGGAATAAGCATTGGCAGCCTGGGTAAACACAACGCTCATGAAACAGTGGAAGAAATTTATGTATACAATTGCAGTTTCACCAAAACAACAAATGGAGCAAGAATCAAGACAGTTCCGACTGGAGTGGTCCAAGTAAGTGAGGTGACATACCGTGGGTTTCAAGGAACATCTGCGAATGACAAAGCTATTAACTTAGATTGTGGCCCATCAGGTTGTTTTAACATTGTATTGGATCAAATTGACATTGTCTCTTCTGATACATCAAAACCGGCTCATTGTTCATGCAATAATGCCCATGGAACAACTACATCTACTGTTCCAAATTGCTCTTGTCTATTGAAATGA 1074 0.4069 MQRLIMTCVLIIGFVSPCLCLRSMVGTKNTFYNVMDFGAHGNGKSDDSHAFSSAWQHTCGTQGTSTLVIPPKGVFLVTNITLKGPCKARSIHILLQGKIVAPAKDAWAKGLDPLILISNLNGLTIDGSGGQIDGFGSTWWKCRSCLRPRVISFVSCNDLTVRKLSISNSPRAHITIDGCNGAIFSNINIHAPRNSPNTDGFDIAFSKNILIEDCTIATGDDCIAINGGSSYINATGIACGPGHGISIGSLGKHNAHETVEEIYVYNCSFTKTTNGARIKTVPTGVVQVSEVTYRGFQGTSANDKAINLDCGPSGCFNIVLDQIDIVSSDTSKPAHCSCNNAHGTTTSTVPNCSCLLK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00898 357 Pfam Glycosyl hydrolases family 28 59 294 IPR000743 GO:0004650|GO:0005975
Gma03g00898 357 PANTHER - 285 355 - -
Gma03g00898 357 PANTHER - 4 284 - -
Gma03g00898 357 SUPERFAMILY Pectin lyase-like 25 355 IPR011050 -
Gma03g00898 357 Gene3D - 22 354 IPR012334 -
Gma03g00898 357 ProSitePatterns Polygalacturonase active site. 236 249 IPR000743 GO:0004650|GO:0005975
Gma03g00898 357 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 285 355 - -
Gma03g00898 357 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 4 284 - -
Gma03g00898 357 SMART pbh1 259 280 IPR006626 -
Gma03g00898 357 SMART pbh1 206 227 IPR006626 -
Gma03g00898 357 SMART pbh1 179 205 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00898 Gma-Chr3 31806138 31809950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g00898 32 346 Glycoside Hydrolase AT5G27530 41.620 8.58e-79 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00898 K01184 - gmx:100782390 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00898 03 31806138 31809950 Gma07g01142 07 15065280 15072567 GST