Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g00016 ATGTCGGGTCTGTATAACTCCAACTTCTCACCAGTGAGGGCTGCTTCTCCTCAGATTAGAACCAACCCAGAAGTCGACAGTCAGTACCTTACGGAGTTGCTGGCAGAGCATCAGAAGCTTGGTCCCTTCATGCAAGCCCTTCCCATATGCAGTCGTCTCTTAAATCAAGAAATATTAAGAGTTTCTGGAATGCTGTCCAATCAAGGTTTTGGTGACTTTGACAGACTGCGGCATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTCATGTCAAGTGTCACTGGAACGGGATTGGGTGGATGGAATAGTCTTCAGCAGGAGAGATTACGCGGAACTCCTGGAATGGCAATGGACTGGCAAGTTGCACCTGCAAGTCCTAGTTCATACACAGTTAAGAGGATTTTGCGCTTGGAAATTCCAGTTGATGCATACCCCAACTTCAATTTTGTTGGAAGGCTTCTGGGACCTAGAGGCAATTCTCTGAAACGGGTAGAAGCTTCTACAGGTTGTCGTGTGTATATTAGAGGAAAGGGTTCAATAAAAGATCCAGACAAGGAAGAAAAATTAAGAGGAAGACCAGGCTATGAGCATCTCAATGAGCAACTCCATATTTTGATTGAGGCTGATTTACCTGCTAATATTGTTGACATAAGGCTCCGGCAGGCTCAGGAAATTATAGAAGAACTGCTCAAACCTGTGGAAGAGTCTGAGGACTATATTAAGAGGCAGCAGTTGCGTGAATTGGCTATGCTGAATTCAAATTTCAGAGAAGAGAGTCCCGGACCAAGTGGAAGTGTATCTCCATTCAATTCCAGTGGAATGAAACGAGCTAAAACTGGCCGATGA 846 0.4504 MSGLYNSNFSPVRAASPQIRTNPEVDSQYLTELLAEHQKLGPFMQALPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSSVTGTGLGGWNSLQQERLRGTPGMAMDWQVAPASPSSYTVKRILRLEIPVDAYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEQLHILIEADLPANIVDIRLRQAQEIIEELLKPVEESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g00016 281 ProSiteProfiles Type-1 KH domain profile. 148 205 - -
Gma03g00016 281 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 256 IPR036612 GO:0003723
Gma03g00016 281 MobiDBLite consensus disorder prediction 255 281 - -
Gma03g00016 281 CDD SF1_like-KH 136 256 - -
Gma03g00016 281 PANTHER RNA-BINDING PROTEIN RELATED 2 281 IPR045071 -
Gma03g00016 281 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
Gma03g00016 281 MobiDBLite consensus disorder prediction 1 20 - -
Gma03g00016 281 MobiDBLite consensus disorder prediction 256 281 - -
Gma03g00016 281 SMART kh_6 131 231 IPR004087 GO:0003676
Gma03g00016 281 Pfam KH domain 138 184 IPR004088 GO:0003723
Gma03g00016 281 Gene3D K Homology domain, type 1 19 262 IPR036612 GO:0003723
Gma03g00016 281 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 2 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g00016 Gma-Chr3 250348 254578 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g00016 K14945 - gmx:100781151 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00016 03 250348 254578 Gma03g00016 03 250348 254578 ECH
Gma18g02017 18 53469126 53474887 Gma03g00016 03 250348 254578 PCT
Gma09g02482 09 50158502 50165685 Gma03g00016 03 250348 254578 PCT
Gma03g00016 03 250348 254578 Gma18g02017 18 53469126 53474887 PCT
Gma03g00016 03 250348 254578 Gma09g02482 09 50158502 50165685 PCT