Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02815 ATGGCGCGGGTGCTGTATATGGGTTTACCTTTCCCCGCAGAACCCCAGAAAACTGCACCTTCTTCTTCTTCTTCTTCTTCTCCCTCGAAGCCATTGAAGCTTCCCCATAGAACCTGCAGCACCAACATATCCATTCCCAGCACTGCCAAAGGCGGTGGCAATCGTTTGCTGAAAACCCAGAAGCTGAATTCAGAGGTTTCTCCTCACAGAGCTGTGTCAGCGGTGAGATTGATGCGGATTGAGCTTGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTTGGCTTTCGCACTCGGGAATTGAATCACCATGATCTTAGATTGGTCACAGACATTGTTGGGGGTACGATTCGCTGGAGAAGATATCTTGATCATCTTATCAGTTCACTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTAAGAATTGGCTTCTATGAGATTGTCAAATTAGATATGCCACCTTATGCtgtcgttgatgagAACGTGAAGCTTGCTAAATTTGCTCTCAGACCTGGGGCTGGCAACATGGTCAATGGAATTCTCCGAAAGCTAGTTGTGCTGAAGGAGAAGGAAAGTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCTTTGGCAACTCTGTACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGAGCAAACCGTGCAAGAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGCATTGAAGgtcccacacaaactttcaccgcatttggatgaatttgttcgtatcaaaactgggttgcagATTATTATTCAAGCTGGTCTTCTCAAAAAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTGGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCATTGATTGCTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGTAAGGTATTTGCAATTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACTGCCATCCATGCTGATCTTCGTACATTACCTGATAGTGGACAGCTTAAGAGTAACAAAGTTTTGTTGGACGCTCCATGCTCTGGACTTGGTGTTCTTTCCAAGAGAGCGGACTTGCGTTGGAACAAGAATCTGGAGGATATGGAACAACTGAAGGAATTACAGGATGAGCTCCTGGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGACGACAGGGTAGTGGCATTTCTTGCAAGACATTCGGATTTCCACATTGATCCAGTAGACAGATATGTTCCTCCTGATTTTGAGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGCTCCTTTGCAGCTCGTTTAGTACGTGATTTATAG 1605 0.4243 MARVLYMGLPFPAEPQKTAPSSSSSSSPSKPLKLPHRTCSTNISIPSTAKGGGNRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVKLAKFALRPGAGNMVNGILRKLVVLKEKESLPLPKVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRARGFSRDDLVTQLNALKVPHKLSPHLDEFVRIKTGLQIIIQAGLLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLYMASHLSGQGKVFAIDVNSGRLRILKETAKLHQVDGVITAIHADLRTLPDSGQLKSNKVLLDAPCSGLGVLSKRADLRWNKNLEDMEQLKELQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVVAFLARHSDFHIDPVDRYVPPDFETSSGFFFSNPVKHSLDGSFAARLVRDL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02815 534 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 29 533 IPR023267 GO:0001510
Gma02g02815 534 SUPERFAMILY NusB-like 106 241 IPR035926 -
Gma02g02815 534 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 229 532 IPR029063 -
Gma02g02815 534 Pfam 16S rRNA methyltransferase RsmB/F 336 530 IPR001678 GO:0008168
Gma02g02815 534 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 29 533 - -
Gma02g02815 534 Gene3D - 85 226 IPR035926 -
Gma02g02815 534 Pfam NusB family 101 207 IPR006027 GO:0003723|GO:0006355
Gma02g02815 534 PRINTS RNA (C5-cytosine) methyltransferase signature 317 331 IPR023267 GO:0001510
Gma02g02815 534 PRINTS RNA (C5-cytosine) methyltransferase signature 346 356 IPR023267 GO:0001510
Gma02g02815 534 PRINTS RNA (C5-cytosine) methyltransferase signature 414 426 IPR023267 GO:0001510
Gma02g02815 534 PRINTS RNA (C5-cytosine) methyltransferase signature 464 480 IPR023267 GO:0001510
Gma02g02815 534 PRINTS RNA (C5-cytosine) methyltransferase signature 515 532 IPR023267 GO:0001510
Gma02g02815 534 MobiDBLite consensus disorder prediction 9 39 - -
Gma02g02815 534 CDD AdoMet_MTases 344 470 - -
Gma02g02815 534 Gene3D Sun protein; domain 3 227 330 - -
Gma02g02815 534 MobiDBLite consensus disorder prediction 16 39 - -
Gma02g02815 534 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 111 531 IPR004573 GO:0006364|GO:0008649
Gma02g02815 534 PRINTS Viridiplantae FMU-related RCMT signature 75 98 IPR023268 -
Gma02g02815 534 PRINTS Viridiplantae FMU-related RCMT signature 99 115 IPR023268 -
Gma02g02815 534 PRINTS Viridiplantae FMU-related RCMT signature 214 227 IPR023268 -
Gma02g02815 534 PRINTS Viridiplantae FMU-related RCMT signature 491 503 IPR023268 -
Gma02g02815 534 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 257 533 IPR001678 GO:0008168
Gma02g02815 534 Gene3D Vaccinia Virus protein VP39 331 534 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02815 Gma-Chr2 53694479 53701552 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02815 K03500 - gmx:100779327 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02815 02 53694479 53701552 Gma02g02815 02 53694479 53701552 ECH
Gma14g00122 14 1015149 1017911 Gma02g02815 02 53694479 53701552 GST