Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02401 ATGACGGCGAGGAGGTTATCGGATGTGGTGCTGGACTGCGTGATGCCATACATACACGACTCCAAGGACCGCGACGCCGTGTCGCAGGTGTGCAGGCGGTGGTACGAGCTCGACTCGCTCACTCGTAAACACGTCACTATTGCGCTGTGTTACACCACCACGCCGGACCGGCTAAGGCGGCGGTTCCCGCACCTGGAGTCGCTGAAGCTGAAGGGAAAGCCGCGGGCGGCGATGTTCAACCTGATACCTGAGGATTGGGGAGGTTTCGTCACGCCTTGGGTCAGAGTGATCTCTCAATACTTTGATTGCTTGAAGTCGCTTCACTTTCGGCGCATGATTGTGAGGGATTCGGATCTTCAAGTTCTAGCTCGTTCGCGCGGTCACGTACTTCAAGCACTCAGGCTGGAAAATTGCTCTGGATTCTCCACTGATGGCCTCTACTATATCGGTCGTTATTGCAGGAATTTAAGAGTCTTGTTTTTAGAGGAAAGCTCACTTGTTGAGAAGGATGGTGACTGGCTCCATGAGCTTGCTTTGAATAATACAGTTCTTGAGACACTGAATTTTTACGTGACTGATATTGCCAACGTCAGAATCCAGGACCTTGAACTTATAGCCAGAAATTGCCCGAACTTAAACTCTGTGAAAATTACTGATTGTGAAGTATTAGATCTGGTGAACTTCTTTCAATATGCATCTGCTCTAGAAGAATTTTCTGGAGGTTCCTACAACGAGGAATCGGAGAAGTACTCTGCTATGTCATTGCCAGCAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTTATGCGGCCTTACTGAAAAAATTAGATCTTCTTTATGCAATGCTGGATACAGAGGACCATTGTACGTTAATCCAAAGGTGCCCCAACTTGGAAGTCCTTGAGTCAAGGAATGTGATTGGAGACAGAGGATTAGAAGTGCTTGCTCGCTGTTGTAGGAGGCTTAAAAGGATTAGGATTGAACGAGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCCCAGAGAGGACTAATTGCTTTGTCACATGGCTGTCCAGAACTCGAATACTTGGCGGTATACGTATCCGACATTACAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTTTGTGATTTTCGCCTTGTCTTGCTAGACCGCGAAGAAAAGATAACTGATTTGCCACTTGACAACGGAGTGAGGGCTCTACTGAGGGGTTGTGACAAGCTTAGAAGATTTGCTCTGTATCTGAGACCTGGGGGATTGACTGATGTTGGGCTAGGTTACGTAGGGCAATACAGCCCCAACGTGAGATGGATGCTTCTTGGTTATGTGGGAGAGACTGATGCAGGGCTTTTGGAATTCTCTAAGGGCTGCCCCAGTCTTCAGAAACTTGAAATGAGAGGATGCTCCTTTTTCAGTGAGTATGCACTAGCTATTGCTGCAACTCAACTGAATTCTCTCAGGTACCTATGGGTGCAAGGGTATAGTGCATCTGCATCTGGACGCGATCTTCTGGCAATGGCTCGCCCCTATTGGAACATTGAGCTGATTCCTTCTAGAAGCGTGGTTGTTAGCAATCAGCAAGAAGATCCTGTAGTTGTCGAGCACCtggctcatattcttgcatattactctcttgctggcccaagaacagattttccagataccgtaatacctttggatcctggaacatatgttgacacctaa 1755 0.4433 MTARRLSDVVLDCVMPYIHDSKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVRVISQYFDCLKSLHFRRMIVRDSDLQVLARSRGHVLQALRLENCSGFSTDGLYYIGRYCRNLRVLFLEESSLVEKDGDWLHELALNNTVLETLNFYVTDIANVRIQDLELIARNCPNLNSVKITDCEVLDLVNFFQYASALEEFSGGSYNEESEKYSAMSLPAKLSRLGLTYITKNEMPIVFPYAALLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRRLKRIRIERGDDDQGMEDEEGVVSQRGLIALSHGCPELEYLAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYVGQYSPNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAIAATQLNSLRYLWVQGYSASASGRDLLAMARPYWNIELIPSRSVVVSNQQEDPVVVEHLAHILAYYSLAGPRTDFPDTVIPLDPGTYVDT 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02401 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 579 - -
Gma02g02401 584 SMART LRR_CC_2 209 228 IPR006553 -
Gma02g02401 584 SMART LRR_CC_2 474 499 IPR006553 -
Gma02g02401 584 SMART LRR_CC_2 304 327 IPR006553 -
Gma02g02401 584 SMART LRR_CC_2 127 152 IPR006553 -
Gma02g02401 584 SMART LRR_CC_2 364 388 IPR006553 -
Gma02g02401 584 SMART LRR_CC_2 422 448 IPR006553 -
Gma02g02401 584 Pfam Transport inhibitor response 1 protein domain 63 109 IPR041101 -
Gma02g02401 584 Gene3D Ribonuclease Inhibitor 43 579 IPR032675 -
Gma02g02401 584 Pfam F-box 5 44 IPR041567 -
Gma02g02401 584 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 5 579 - -
Gma02g02401 584 Gene3D - 1 42 - -
Gma02g02401 584 SUPERFAMILY RNI-like 81 393 - -
Gma02g02401 584 SUPERFAMILY RNI-like 357 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02401 Gma-Chr2 50067087 50071662 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02401 K13463 - gmx:100819069 1168.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02401 02 50067087 50071662 Gma02g02401 02 50067087 50071662 ECH
Gma14g00527 14 5060816 5066544 Gma02g02401 02 50067087 50071662 GST
Gma18g00281 18 2346995 2351014 Gma02g02401 02 50067087 50071662 PCT
Gma11g02293 11 38291170 38295394 Gma02g02401 02 50067087 50071662 PCT
Gma02g02401 02 50067087 50071662 Gma18g00281 18 2346995 2351014 PCT
Gma02g02401 02 50067087 50071662 Gma11g02293 11 38291170 38295394 PCT