Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02071 ATGGGTTCTGGTTGGAGAAGAGCCTTTTGCACTAGCGACCCAGATAATTCCACAATACGCACCAAACACAGAACCCAAAGCCCTACTCCTTCCCCCAGAAGCTGCGTCAGCCTCGGCTTTCTCTCTTCAACAATCACAGAATTATCATCAAATAGCAGTCCCAAATTTCAAACCAAAACCAACACCTCAAATTCAAATTCTCCTCTCTCTCCTAAGCTCAACCTCTCCCTCTTCGGAAACAGTTTCAAATTCAGAAATAATTGTGGAATCTGTTCGAATAGCGTGAAGACAGGGCAGGGAACTGCCATTTACACTGCAGAGTGCGGTCACGCGTTTCACTTCCCATGCGTCGTTTCCGTTTCCCATGCACGCACCAACGTCTGCCCCGTATGCGACGCCACGTGGAACGACGTGCCGCTTCTGCAAAACAACGCCGAGAAACAAAATCAACCGATTCATCATCATCGTTCCGATTCTGTCTCCTCCTACGATGACGACGAGCCTCTTCCTTCTCCTCTCACATGCTCCGCACAAATCGCTCCAATCCCCGAAGATGAAGAAAACGACGACGTATCCGAGTTCCCTGGCTTTTTCGTCGATCCAAAGCCTCAATCCTCGTTGAGACAAAACGACGGTGGTGATTCGAGGAGCGTTCGAGTGAAGCTGATGCCGGAGTGCGCGGTCATATCAGTTTCGCAAAGCCACGAAACACGTGCTTTGGTTTTAAGAGTGAAAGCTCCACCGGTGCTGTCGCCGCCGCGATGGCGGCGGCCTCCGATGGATCTCGTGACGGTGCTTGACGTTGGAAACAGCATGAGCGGCGCGAAACTTCACATGCTAAAGCGCGCGATGCGGTTGGTTATATCTTCTCTCGGCGCGGCTGACCGGCTCGCCGTCGTGGCTTCCGCGGCTGATTCCAAACGGTTGCTACCGCTGCGGAGAATGACAGCTCAGGGACAACGCGCGGCTCGGCGCGTCGTAGATAGGCTCGTGTGTGGCCATGGAAACAGCGTTGGTGAAGAAGCAATGAACATAGCCGCGAAGGTTCTCGAAGATCGGAGAGAGAGAAACACTCTCGCTAAGATTTTGCTCTTATCAGACGGTCAAGATAACGCCAACAACAAAAATCAACGGAGATTCTTAAGCCACGTGTCTTCTTCCATCCGGTTCGATTGTATCAAAGTTCCGGTTCTTTCGTATGGCTTCGAGACGAAGAGAACCGGCTTAATGCACGAACCGTTAGAGGATGATTTTGCATTATACGTTGATAGAACATTGAGTGTGGCGGTGCATGATTTGAGAATTCAGCTTGGTTTCTCGGCGCCGGCGGAAATCCGAGCCGTTTATTCATGCAGCGGGGGACCCACTGCGCTGAGTACTAGCGCGGCTCGGCTTGGTGATTTATACGCCGAAGAAGAGAAGGAATTGTTAGTAGAGGTTAGAGTGCCCACGTCAGCATTGGGGACCCACCACGTGATGACATTGCGGTGTGTTAATATTAACAAAGACCCTGTGTCTCAAGAGTTTGTATACGGTGCGGAACATGTGTTTACGGTGGTGCCGCCGCCTAAGAGTATTCCAATTTGTGGCGGTAGGGTGGAGCGGCTTAGAAATGTGTTTATTACGAGCCGAGCCGTAGCCGAGTCGCGGAGGCTGGCTAAGCACAACGATTTTTCGAGTGCTCATCATTTGCTTTCTTCGGCTCGGGCGCTTTTGGCTCAGCTTGGCTCGGCTGAGGAATACGTACGTGGCTTGGAAGCCGAGCTTGTGGAGCTTCAGTGGCGGAAGCAGCAGCAACGGGTTGAGAGGGAGGCGAGGTGGGTGGATGAGAGTGGTGAGGTTTTAACGCCGACGTCGGCTTGGAGAGCCGCTGAGAAGCTGGCTAAAATGGCTAGGATGAAGAAGTCCTTGAACAAAGTGAGCGACTTGCACGGCTTCGAGAATGCTAGGTTTTAA 1956 0.5204 MGSGWRRAFCTSDPDNSTIRTKHRTQSPTPSPRSCVSLGFLSSTITELSSNSSPKFQTKTNTSNSNSPLSPKLNLSLFGNSFKFRNNCGICSNSVKTGQGTAIYTAECGHAFHFPCVVSVSHARTNVCPVCDATWNDVPLLQNNAEKQNQPIHHHRSDSVSSYDDDEPLPSPLTCSAQIAPIPEDEENDDVSEFPGFFVDPKPQSSLRQNDGGDSRSVRVKLMPECAVISVSQSHETRALVLRVKAPPVLSPPRWRRPPMDLVTVLDVGNSMSGAKLHMLKRAMRLVISSLGAADRLAVVASAADSKRLLPLRRMTAQGQRAARRVVDRLVCGHGNSVGEEAMNIAAKVLEDRRERNTLAKILLLSDGQDNANNKNQRRFLSHVSSSIRFDCIKVPVLSYGFETKRTGLMHEPLEDDFALYVDRTLSVAVHDLRIQLGFSAPAEIRAVYSCSGGPTALSTSAARLGDLYAEEEKELLVEVRVPTSALGTHHVMTLRCVNINKDPVSQEFVYGAEHVFTVVPPPKSIPICGGRVERLRNVFITSRAVAESRRLAKHNDFSSAHHLLSSARALLAQLGSAEEYVRGLEAELVELQWRKQQQRVEREARWVDESGEVLTPTSAWRAAEKLAKMARMKKSLNKVSDLHGFENARF 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02071 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 146 IPR013083 -
Gma02g02071 651 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 651 - -
Gma02g02071 651 MobiDBLite consensus disorder prediction 149 163 - -
Gma02g02071 651 Pfam RING-like zinc finger 87 117 IPR001841 -
Gma02g02071 651 SUPERFAMILY vWA-like 256 377 IPR036465 -
Gma02g02071 651 SMART ring_2 88 131 IPR001841 -
Gma02g02071 651 SUPERFAMILY RING/U-box 82 142 - -
Gma02g02071 651 Pfam von Willebrand factor type A domain 262 369 IPR002035 -
Gma02g02071 651 ProSiteProfiles Zinc finger RING-type profile. 88 132 IPR001841 -
Gma02g02071 651 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 651 - -
Gma02g02071 651 Coils Coil 582 602 - -
Gma02g02071 651 MobiDBLite consensus disorder prediction 146 167 - -
Gma02g02071 651 ProSiteProfiles VWFA domain profile. 261 401 IPR002035 -
Gma02g02071 651 CDD RING-H2 88 131 - -
Gma02g02071 651 Gene3D von Willebrand factor, type A domain 261 411 IPR036465 -
Gma02g02071 651 SMART VWA_4 259 426 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02071 Gma-Chr2 46444564 46446890 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02071 - - gmx:100819417 1242.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02071 02 46444564 46446890 Gma02g02071 02 46444564 46446890 ECH
Gma14g01842 14 49047736 49050287 Gma02g02071 02 46444564 46446890 GST