Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02061 ATGGCTTCTTTCTTTTCCTCTGCTGTCACTGCTACTCTCAAGCTCCACCCACAATTCCCAAAATACTCACCTAGCTCCTATCCCCCAGAGAAGGGTCAAAGCATTTCTTTCCAGAAAAGCCACAGATTCACACATTTGGATTTTGGGGAAGCACTTTTGTTGAACAAAGAGGGGACAGAGGAGGAGGAAAAATTGTTCTACGTTCCCTTGTTGCAACAATGCTTAGACAAGCGCTCCTATTCAGGTACACAAATTGTTCATGGTCATGTCATGAAAACAGGTTGCCATGATAATTTTTTTGTCATGTCATTTCTGGTCAATGTTTATGCCAAATGTGGGAACATGGAGGATGCTCGCAGGGTGTTTGAGAACATGCCTAGAAGAAATGTGGTGGCGTGGACCACGTTAATGGTGGGATTTGTGCAAAACTCACAGCCAAAGCACGCCATTCATGTGTTTCAAGAGATGTTGTATGCAGGAAGTTACCCTTCAATTTACACTCTTTCTGCTGTTCTACATGCTTGTAGTTCTTTGCAGTCTCTCAAGTTAGGAGATCAATTCCATGCTTACATAATCAAATACCATCTTGACTTTGACACCAGTGTTGGCAGTGCGCTTTGTAGTTTATACTCCAAATGTGGCAGGTTGGAGGATGCTCTTAAAGCATTTAGTAGAATCAGAGAAAAGAATGTTATTTCGTGGACTTCAGCTGTTTCTGCTTGTGGGGACAATGGTGCACCTGTGAAGGGGTTGAGACTTTTTGTTGAGATGATTTCTGAGGACATAAAGCCTAATGAGTTCACTTTGACCAGTGCCTTGAGCCAGTGTTGTGAAATTCCATCTTTGGAACTTGGGACTCAGGTTTGTTCGCTGTGCATTAAATTTGGCTATGAATCAAACCTACGTGTTAGAAATTCTTTGTTGTATTTGTACCTCAAAAGTGGTTTTATTGTTGAGGCTCATAGGTTCTTTAATAGAATGGATGATGTCAGTATGGTTACATGGAATGCAATGATTGCCGGGCATGCGCAAATGATGGAACTCACTAAGGATAATCTTTCTGCATGCCAAAGAGGAAGTGAAGCACTGAAAATTTTCTCCAAGTTGAATCAATCAGGCATGAAACCTGATCTGTTTACCTTATCTAGTGTCTTAAGTGTATGCAGTAGAATGCTGGCTATAGAGCAGGGGGAACAAATTCATGCACAGACTATCAAAACCGGATTCTTGTCGGATGTGATTGTAAGTACTTCACTGATTAGTATGTACAATAAGTGTGGAAGCATTGAGAGGGCTAGCAAAGCATTTCTGGAGATGTCTACTAGAACTATGATAGCATGGACTTCTATGATTACAGGTTTTTCACAGCATGGTATGTCACAACAAGCATTGCATATTTTTGAGGATATGAGCCTAGCAGGAGTTAGACCAAACACGGTCACTTTTGTGGGTGTTTTATCAGCATGTAGCCATGCTGGCATGGTCAGTCAAGCACTCAACTACTTTGAGATTATGCAAAAGAAATATAAAATTAAGCCTGTTATGGACCACTATGAATGCATGGTTGATATGTTTGTTAGATTAGGTCGGTTGGAGCAAGCTCTGAATTTCATAAAGAAAATGAATTATGAGCCTAGTGAGTTTATTTGGTCAAACTTTATTGCTGGTTGTAGAAGCCATGGGAATCTGGAATTGGGGTTTTATGCTTCTGAACAGTTACTAAGTCTCAAACCAAAAGATCCAGAGACTTATGTATTGTTGTTGAATATGTACCTCTCAGCTGACCGTTTTGATGATGTTTCAAGGGTGAGGAAGATGATGGAAGTGGAGAAAGTTGGAAAGTTGAAGGATTGGAGCTGGATTAGCATTAAAGACAAAGTGTATTCATTCAAAACCAATGACAAAACACACCCACCGAGTTCACTAATATGTAAATCATTGGAGGATTTACTTGCCAAAGCAAAGAATCTTGGATATGAGATGCTAGAAAGTGTGGAAATAAGTGATGAAGAGGAGGAGGAAAAGACATCCTCCCCTACCATTTATCACAGTGAGAAGCTGGCCATTACATTTGGGTTGGAGAACTTGCCAAATTCTTCTCCAATAAGAGTTGTCAAGAGCACCTTAATATGTAGGGATAGCCATAACTTTATTAAGTGTGTCTCAACGCTAACGGGTAGGGAAATCATCGTTAAAGATAGTAAGCGGCTTCACAAATTTGTCAATGGAGAATGCTCATGTGGAAATTTTGGCGGTTTCCTCTAA 2265 0.404 MASFFSSAVTATLKLHPQFPKYSPSSYPPEKGQSISFQKSHRFTHLDFGEALLLNKEGTEEEEKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTHPPSSLICKSLEDLLAKAKNLGYEMLESVEISDEEEEEKTSSPTIYHSEKLAITFGLENLPNSSPIRVVKSTLICRDSHNFIKCVSTLTGREIIVKDSKRLHKFVNGECSCGNFGGFL 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02061 754 SUPERFAMILY TPR-like 398 593 IPR011990 GO:0005515
Gma02g02061 754 Pfam DYW family of nucleic acid deaminases 666 750 IPR032867 GO:0008270
Gma02g02061 754 Pfam E motif 560 621 IPR046848 -
Gma02g02061 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Gma02g02061 754 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 60 690 - -
Gma02g02061 754 Gene3D Tetratricopeptide repeat domain 460 651 IPR011990 GO:0005515
Gma02g02061 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Gma02g02061 754 TIGRFAM PPR: pentatricopeptide repeat domain 232 266 IPR002885 -
Gma02g02061 754 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Gma02g02061 754 TIGRFAM PPR: pentatricopeptide repeat domain 131 163 IPR002885 -
Gma02g02061 754 TIGRFAM PPR: pentatricopeptide repeat domain 105 131 IPR002885 -
Gma02g02061 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Gma02g02061 754 PANTHER OS01G0913400 PROTEIN-RELATED 60 690 - -
Gma02g02061 754 Pfam PPR repeat 232 261 IPR002885 -
Gma02g02061 754 Pfam PPR repeat 208 231 IPR002885 -
Gma02g02061 754 Pfam PPR repeat 305 328 IPR002885 -
Gma02g02061 754 Pfam PPR repeat 417 440 IPR002885 -
Gma02g02061 754 Pfam PPR repeat 518 541 IPR002885 -
Gma02g02061 754 Pfam PPR repeat family 445 490 IPR002885 -
Gma02g02061 754 Pfam PPR repeat family 128 176 IPR002885 -
Gma02g02061 754 Gene3D Tetratricopeptide repeat domain 54 182 IPR011990 GO:0005515
Gma02g02061 754 Gene3D Tetratricopeptide repeat domain 286 404 IPR011990 GO:0005515
Gma02g02061 754 Gene3D Tetratricopeptide repeat domain 183 285 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02061 Gma-Chr2 46286251 46289291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02061 67 750 Glycoside Hydrolase AT3G49170 35.014 5.54e-147 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02061 - - gmx:100781103 1479.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02061 02 46286251 46289291 Gma02g02061 02 46286251 46289291 ECH
Gma14g01833 14 48872003 48875248 Gma02g02061 02 46286251 46289291 GST