Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02060 ATGGCCATGGCTCTTCCTCTTCGCAGACTCTCCTCCACCCTCAACAAACCTCTCGCCAGCGCTACTTCCATTTATCATCGCATGTCCTCCTCGCTCTCCGCTCAGGAGAAAGACAAATCTCGCGCCGATTGGATAAAGCAGCTCAACGATCCTCTCGAGACCATCGATCCCGAGATCGCTGACATAATCGAACTCGAAAAAGCGCGTCAATGGAAGGGGTTCGAACTTATACCTTCGGAGAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACGAATAAATACAGCGAAGGATATCCCGGTGCTAGATACTATGGAGGAAATGAGTATATTGACATGGCTGAGACCTTGTGTCAGAAGCGTGCACTTGAAGCTTTTCGGCTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCTGGATCCCCTTCTAACTTCCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTGTCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATGTTGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTCTTCAGGAAGGGTGTGAAAGAGATAAACAAACAAGGGAAGGAAGTGTTGTATGACTATGAAGACAGAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCTGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAAAGCAAGTACTTAGCAACTGCTCAGCATTTGCACAGAGTTTGTTAGAGAAAGGCTACGAACTTGTATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAGGCATTCGAATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTCGAAAAAGTAGCTGAATACTTTGATGCAGCTGTCAAGTTAGCCTTGCAGATTAAGGAAAACACCAATGGTACAAAGTTGAAGGATTTTGTGGCAGCTATGCAATCAGATGAACAAGTTCAATCTAAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGACATAGAAACAATGAAGTATGGCAAATGA 1545 0.4369 MAMALPLRRLSSTLNKPLASATSIYHRMSSSLSAQEKDKSRADWIKQLNDPLETIDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDRINQAVFPGLQGGPHNHTISGLAVALKQAMTPEFKNYQKQVLSNCSAFAQSLLEKGYELVSGGTDNHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFEKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMQSDEQVQSKIANLRHEVEDYAKQFPTIGFDIETMKYGK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02060 514 Pfam Serine hydroxymethyltransferase 52 449 IPR039429 -
Gma02g02060 514 Hamap Serine hydroxymethyltransferase [glyA]. 51 504 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Gma02g02060 514 Gene3D - 81 354 IPR015421 GO:0003824
Gma02g02060 514 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 5 513 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Gma02g02060 514 SUPERFAMILY PLP-dependent transferases 43 506 IPR015424 -
Gma02g02060 514 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL 5 513 - -
Gma02g02060 514 CDD SHMT 56 476 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Gma02g02060 514 PIRSF SHMT 32 509 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Gma02g02060 514 Coils Coil 479 499 - -
Gma02g02060 514 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 275 291 IPR019798 GO:0030170
Gma02g02060 514 Gene3D Aspartate Aminotransferase, domain 1 56 501 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02060 Gma-Chr2 46275965 46282700 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02060 K00600 - gmx:100816213 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02060 02 46275965 46282700 Gma02g02060 02 46275965 46282700 ECH
Gma14g01832 14 48861024 48868539 Gma02g02060 02 46275965 46282700 GST