Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02057 ATGGCCTGCAAATCTCACGTATTTGGTCTGTCTGGTGGGGTTATTGACTTTAGAAAACCTAAGGGCACTTGGTCTAGAAAGCATTTGGGCAATTGTGTGTTTGCTGTTTCGAAATATGAAAATTCTGGTTTGAAAGGTAATCTGCAACATTCTGAAAGATTCTCTAAAGGTGCTTTAAATGGGGTCAATACATCCTTGAATTTTGAGGAGTCTGAGATTCATCATCTCTGCAGGTTGATTAGAAATGGGGAATTGGAGGAAGGTTCTAGGTTTCTTGAGTATATGACTAACAAAGGAAAAATCCCTGATGTTGTTGCTTGCACTGCTTTAATCCGTGAGTTTTGCAAGATTGGTAGGACTAAGAATGCAACTCGAATCATGGGAATTCTGGAGGAGTCTGGAGCTGTTATTGATGCAAACAGTTACAATGTTTTGATTAATGCTTATTGCAAATCAGGGGAGATAGAGGAAGCCTTGCGGGTTTTAGATCACACGAGTGTTGCTCCAAATGCTGCTACATATGATGCAGTTTTGTGTAGTTTGTGTGATAGAGGGAAATTGAAGCAAGCCATGCAAGTACTTGACAGGCAGCTGCAAAGCAAGTGTTACCCAGATGTAGTTACATGCACTGTATTGATTGATGCAACTTGTAAAGAAAGTGGAGTTGGTCAGGCAATGAAGCTGTTCAATGAGATGAGGGGAAAAGGATGCAAACCTGATGTGGTTACATATAATGTTCTTATAAAAGGGTTTTGCAAAGAAGGTAGGTTGGATGAAGCAATTATATTTTTAAAGAAATTGCCATCCTATGGTTGTCAGTCTGATGTGATTTCTCACAATATGATCTTGCGTAGCTTGTGTAGTGGTGGCAGATGGATGGATGCTATGAAACTATTGGCTACCATGCTTCGTAAGGGGTGTTTCCCGAGTGTTGTTACTTTCAATATCTTGATCAATTTCTTGTGCCAGAAAGGCTTACTAGGTAAAGCCCTTAATGTCTTGGAGATGATGCCAAAGCATGGTCATACTCCTAATTCCAGAAGTTTCAATCCATTGATTCAAGGGTTTTGTAACAGAAAAGGTATTGATAGAGCAATTGAGCACTTGGAAATAATGGTATCTAGGGGTTGTTACCCAGATATAGTGACCTATAATATTTTGCTAACTGCATTATGCAAAGATGGGAAGGTGGATGATGCAGTTGTGATACTGAGCCAGCTAAGTTCCAAGGGTTGCTCTCCTTCTCTAATTAGTTATAATACAGTGATTGATGGGCTTTTGAAGGTTGGAAAAACAGAGTGTGCTGTTGAACTTTTTGAAGAGATGTGCAGAAAAGGTCTTGAAGCAGATATAATTACTTACAATATAATAATTAATGGGCTTTTAAAGGTGGGAAAAGCCGAACTGGCTGTAGAGCTCTTGGAAGAGATGTGTTATAAGGGTCTTAAGCCTGATCTAATTACTTGCACTTCAGTAGTGGGGGGCCTAAGTCGTGAAGGAAAGGTTCATGAAGCAATCAAATTTTTCCATTACTTGAAAGGGTTTGGTATTAAACCCAATGCATTCATTTATAACTCAATAATGATGGGACTATGTAAAGCTCAGCAAACCAGTCTTGCCATAGATTTTCTGGTTGATATGGTGGCAAACGGATGTAAACCTACTGAGGCTTCCTATACTACTCTCATAAAAGGCATTACTTATGAAGGATTAGCTGAGGAAGCTTCGAAGTTGTCAAATGAATTGTACTCCAGAGGACTTGTGAAGAAAAGTTTGATTGTAAAAGTAAGTCAAGACTTGTTGTGTGAGATTTTGGCAAACAAATTTATGCGTTTTTCTTTGGGTCAATCATTTGATAATTTCATGATTGATCTCTGCCTTTCCAGCCTTTTTTTTCTTCTTCTAATTATTCTTTTACAAAATAACCTCGATAGAAATTA 1940 0.3845 MACKSHVFGLSGGVIDFRKPKGTWSRKHLGNCVFAVSKYENSGLKGNLQHSERFSKGALNGVNTSLNFEESEIHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKTECAVELFEEMCRKGLEADIITYNIIINGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVKKSLIVKVSQDLLCEILANKFMRFSLGQSFDNFMIDLCLSSLFFLLLIILLQNNLDRN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Gma02g02057 646 PANTHER OS02G0565400 PROTEIN 451 598 - -
Gma02g02057 646 PANTHER OS02G0565400 PROTEIN 17 455 - -
Gma02g02057 646 Pfam PPR repeat 271 302 IPR002885 -
Gma02g02057 646 Pfam PPR repeat 480 511 IPR002885 -
Gma02g02057 646 Pfam PPR repeat 375 406 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Gma02g02057 646 SUPERFAMILY HCP-like 355 480 - -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Gma02g02057 646 Gene3D Tetratricopeptide repeat domain 198 268 IPR011990 GO:0005515
Gma02g02057 646 Gene3D Tetratricopeptide repeat domain 338 407 IPR011990 GO:0005515
Gma02g02057 646 Gene3D Tetratricopeptide repeat domain 269 337 IPR011990 GO:0005515
Gma02g02057 646 Gene3D Tetratricopeptide repeat domain 408 479 IPR011990 GO:0005515
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 168 IPR002885 -
Gma02g02057 646 PANTHER ATPASE EXPRESSION PROTEIN 3 451 598 - -
Gma02g02057 646 PANTHER ATPASE EXPRESSION PROTEIN 3 17 455 - -
Gma02g02057 646 Gene3D Tetratricopeptide repeat domain 495 604 IPR011990 GO:0005515
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 141 163 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 487 521 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 452 485 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 242 275 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 523 556 IPR002885 -
Gma02g02057 646 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Gma02g02057 646 Pfam PPR repeat family 102 151 IPR002885 -
Gma02g02057 646 Pfam PPR repeat family 204 253 IPR002885 -
Gma02g02057 646 Pfam PPR repeat family 309 358 IPR002885 -
Gma02g02057 646 Pfam PPR repeat family 414 463 IPR002885 -
Gma02g02057 646 Pfam PPR repeat family 519 565 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Gma02g02057 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Gma02g02057 646 Gene3D Tetratricopeptide repeat domain 28 197 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02057 Gma-Chr2 46263884 46266358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02057 79 599 Glycosyltransferase AT1G05670 28.952 5.34e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02057 - - gmx:100779493 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02057 02 46263884 46266358 Gma02g02057 02 46263884 46266358 ECH
Gma14g01831 14 48846530 48848682 Gma02g02057 02 46263884 46266358 GST