Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02048 ATGGGTTGGATAGAAGCAATTTACACTCTTTTAACCAAATCATTCACCGTCCTTTCCTGGCCTCCAGTTAGTTTTCTTTGTCCATTGTTGGTTTCTGTTCGGGCAATGGAGAGTGATTCCAGGTCCAGCAACCAGCGATGCCTTGCTTTTTGGGTTCTGTTTTCCTTGTGTATGATCGTGGAAGGGGAACTTTCAGTGTTATTTAACTGCCTCCCATGGTGGCCTCATGTGAAATCCATAGCAACTATCTTGCTGTTGATACCTTATGTTGGTGCAGCACCATATGTCTATAAATTCTTAACCAGACACTACTGTACTTGGAGCCTATTTACAAGGACATCAAACATCTAcagtgagaagagcacacatttggaatcagatgaggatagtaaacttgttgatgtctctgaccagaaaacaagtcaaatacaagaaaagaaacttgaagcatatcaaatattgacaattacaacaagtcaaatagaagaaaagaaacttgaagcatatcagGAGACAGATGATACCACCGGTTGTGGCAAGACAGAAAGCAGTTACACAAGTCTAACTAGTAAAAATCTAATCCAGAAGGAATGGAGCTGTGCATTATGTCAGATTAGTACAACCAATGAAAATTTCTTAAGGGCACATCTTAAAGGGAGGAAACACAAGGATAAGGAAAATGAGCTTAGAGTTGAGTTATCCTCTACTCAGAAAAGAATCAAAGGGATGGTTCTACTAACGAATCTCAACCAAATTGCAAACATTCTCGATCCAGTTTCCAGATCCATAAGATGGTGTGAATGGACAAAGCCAGAGTTTGGATGGACAAAATTAAACACTGATGGTTCTATTCATAGTAACACTGCTAGTTTTGGTGGGCTGCTTCGTGATTACAGGGGTGAACCAATATGTGCTTTTGTCTCTAAAGCTCCTCAAGGAGACATTTTCTTGGCTGAGCTGTGGGCCATGTGGAGAGGCCTTGTTCTTTCCTTGGGTCTAGGGATTAAAGCAATATGGGTGGAATCAGACTCCATGAGTGTTGTGAAGACGGTTAATAGAAAGCAATTTTGTCCAAAAGCTGTTGGCTATTTGAAGCAAATATGGAAACTGTTAAAGAAGTTTGATAAATATCAAATTTCTCACACATGGCGTCAAACTAATAGAGCAGCAGATCATCTTGCTAAGATGGATCTTTTGGCAAATGATGTGGTTTTGTGGCCAGTTGATTTTCCACCTAGCCTTTGCAGTATCATTAAAGATGATGCCAAAGGAACGAAATATCTTAGACGATGA 1293 0.3565 MGWIEAIYTLLTKSFTVLSWPPVSFLCPLLVSVRAMESDSRSSNQRCLAFWVLFSLCMIVEGELSVLFNCLPWWPHVKSIATILLLIPYVGAAPYVYKFLTRHYCTWSLFTRTSNIYSEKSTHLESDEDSKLVDVSDQKTSQIQEKKLEAYQILTITTSQIEEKKLEAYQETDDTTGCGKTESSYTSLTSKNLIQKEWSCALCQISTTNENFLRAHLKGRKHKDKENELRVELSSTQKRIKGMVLLTNLNQIANILDPVSRSIRWCEWTKPEFGWTKLNTDGSIHSNTASFGGLLRDYRGEPICAFVSKAPQGDIFLAELWAMWRGLVLSLGLGIKAIWVESDSMSVVKTVNRKQFCPKAVGYLKQIWKLLKKFDKYQISHTWRQTNRAADHLAKMDLLANDVVLWPVDFPPSLCSIIKDDAKGTKYLRR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02048 430 Gene3D - 275 398 IPR036397 GO:0003676
Gma02g02048 430 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Gma02g02048 430 Pfam Zinc-finger of C2H2 type 198 222 - -
Gma02g02048 430 SUPERFAMILY Ribonuclease H-like 275 399 IPR012337 -
Gma02g02048 430 SUPERFAMILY beta-beta-alpha zinc fingers 191 230 IPR036236 -
Gma02g02048 430 Pfam TB2/DP1, HVA22 family 28 103 IPR004345 -
Gma02g02048 430 Pfam Reverse transcriptase-like 279 396 IPR002156 GO:0003676|GO:0004523
Gma02g02048 430 PANTHER PROTEIN A, PUTATIVE ISOFORM 1-RELATED 2 430 - -
Gma02g02048 430 CDD RNase_H_like 278 395 IPR044730 -
Gma02g02048 430 Gene3D Classic Zinc Finger 186 233 - -
Gma02g02048 430 PANTHER HVA22-LIKE PROTEINS 2 430 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02048 Gma-Chr2 46132319 46135359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02048 267 398 Glycoside Hydrolase AT2G33160 28.986 3.08e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02048 - - gmx:102661917 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02048 02 46132319 46135359 Gma02g02048 02 46132319 46135359 ECH
Gma14g01823 14 48715163 48718666 Gma02g02048 02 46132319 46135359 GST