Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02024 ATGCGTGTCACCATTGATCTAGGGTTTTGGAGCCTGGTCCTTGTCGCGGTGGTCGGCCTCTCCGTGCCAGCGGTCGCCTTCTTCGTCCGGCACGGGTGCCGGCGCACGGCGGCCAGGGCGGAGGAGATCAAGAGGCTTCTCGTTCTCGCCGATGAGGAGTCCGTTAGGGCAGAGACAGAGACGGAGGCTTTGTACTACCACCAATACCGCGTTGTTTCGGGGGAACTGCCGAGGGACAAAGTATGCGCGGTGTGTTACTCTCCCACCACCACGCGCTGCGCAAGGTGCAAAGCGGTTCATTACTGTTCTGGAAAGTGCCAAATTGTTCATTGGCGTCAAGATCACAAAGATAAATGCCATCCTCCCAGCCCAACTTGCCAGACGGAAGATCTGGTTAGTGATCTTGGGAAGAAGGTAGCAGAACCAGACTATCGTGGAGTCCATGATGAGAAGTCTCAGATTAAAAGCAGAGAGTATGCAACATCATCTGACAAACCCCTGTTGTCTGATATGAGGTGTTCTCCTGATATTTCATGTGCAAGGGATGATAGTGTAAGAGTTGAGTCTCTTCAAGAGGGAAATGTTACAGGCTCTAATTCTGAATTATCTAGTAACTCATTCTCTGGATTCTCAGCTTCCACTGGTGCTAGTGAATCATCTGATGATTCTTCTGTCTGTGAGAGTGTCACCTCCAATGAGCATGAGAGATGCGAGGGACATATTTTTGTGGACCCCACCATTGACATTTTTTATACCACTTGTAATAGCATTGGTGAATCCATTCCATTATCACCTAAGTTTGCTAGTTTGGTTGATTTGGTTGATGGTAATCCTGCAATGCATAAATTAAATCAAATTAGGCCTGATTTTAGTAAACAAGAGAGTAAACTCACATTAAATGGTAGTTCTGGTTTGCGTATGCGGAAAGGGGCAACAATTGAGCCTTCTACAGTGTCTTCTGGATTCTGGAATACAACTCTTGATTCAACGAGGATAAAAGATGACTCTAATAGTGACCCTCTTGCATCCCACTATGATGATTCTGCTCCAAAGTCAGTTAAGAATAATATGCCATGTGCAAGATCAGCATCTTCAGAAAATGAGGGTGTTGGTTGTGCTGATGCTTTGAGCATCCATAATTTGCAAACAGTTGGTTTGAGGGTATCAAATCATGTTATCAACACTGGTAGCACCTTGAAGTCAGCTCAAAGTAGATGTCTGCCACATGCATTTGCTGATACTAAGTTAGTTTCTAGAACCGAAGAGCATTCACATTACAGTACAAAATGTGGGAATAATGGCATCCAATCTGGCAGTGCAACTTCAAATTCAAAGAATGACCTGAAAACATCTGTTCTAAAAGTTTCTGATCAGCTTAGAGGATCAAAGTTGTCTAAACCCTTTCCATCAGCTGTTGGGAGTGATATTACTGGAAAATACAGTGATAAGGGTCTTTTTCCATATGATTTGTTTGTCAAGCTTTATAACTGGAACAGAGTGGAGTTGCAACCATTTGGTCTTATAAACTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCAGTTACACCTCCCTTGACTGCTTATTTGCTTCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAACTCTCCCATGTCACCTCTGGGCATTCTCTCTCAACTACAGAATATTGGGAGCCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTAAGGCTTGTTGTTGAGACAATGCAATCTGTTTGCCTTATGGAATCTGGGGATAACATGTCAGATTCATTGAAAGAGGAAACTAATTTAATGGGCCTAACATTTGGAGGTTACCTCCAATCAAAGATCAAATGCATGAAATGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACAGTTGAGATAGAAGGGGAGATAGCAACCCTGGAGGAGGCCCTTCGACAGTTTACAAGTGCTGAGACTCTGGATGGAGAAAACAAGTACCGCTGTGTCAGCAGGTGTAAATCTTATGAGAAGGCCAAGAAGAAAATGACAGTTTTGGAGGCACCTAATGTTCTTACTATTGCATTAAAGAGATTTCAGTCCGGAAAATTTGGGAAGCTCAATAAACCTATTCGGTTTCCTGAAATACTGGACTTGGCACCTTTCATGAGTGGGACTAGTGATTTGCCTATATACAGGCTATATGGGGTAGTTGTTCACCTGGATATCATGAATGCTGCTTTTTCGGGTCATTATGTGTGCTATGTGAAGAATTTCCAAAGCAGGTGGTTCAAGGTTGATGACAGTGTGGTAACAGCTGTTGAATTGGAAAGTGTCTTGGCAAAAGGAGCATACATGCTTTTTTATTCAAGATGCTCACCTAGGGCCCCAAGATTAATCAGGAACAGTATAGTATCTTCAGACTCAAAATGGAAACTCAATGGAAAAACTGCCACAATGAAGTCAAGGCGACTATCCACAGGTGCTGGTGTTAATTTGACTTCCCCAGGTGGTTCAGCTTCCTTAGATACACTCTATTCGAAGTTTCTCCACTCAAAAAGGATTTTGGAAGAAGATTCATCAAGTGATAACTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCTTGCAGTACAGATAGCACGGCTGATTCAACCAGTACAGATGACTTTGCTGATTATATTTTTGGTGATGTGGGACGTGGTGCAGGTGGCATGTTGAGAAATTCTGATTCCAACATCTGCCCTGCATTGCCATCTTTTCCCCACTCTGGATATTTTCCCTCTTCTGATATAGACCAACATGATTCAGTAGTTTTGCCACATTCGACTGGGTTCCAGCCGTCTCCTTCAGAAGAGGGTCTTTTGTACAGGAACAGAGTAGTGGATGTTAAAAGGAGTGGGGGAGGTGTTTCTCATTTTCATCTTGACACAAATATAGAGCATAGGAAGTTAGATACAAGTAGTAGTAGTATTAGTTTTAGGGAGACTGATTCTGTATTTAATGATAGAAATTCTGGTGTATCATGTACAAAGTCTAGGTACAGAACGGATTGA 3111 0.4269 MRVTIDLGFWSLVLVAVVGLSVPAVAFFVRHGCRRTAARAEEIKRLLVLADEESVRAETETEALYYHQYRVVSGELPRDKVCAVCYSPTTTRCARCKAVHYCSGKCQIVHWRQDHKDKCHPPSPTCQTEDLVSDLGKKVAEPDYRGVHDEKSQIKSREYATSSDKPLLSDMRCSPDISCARDDSVRVESLQEGNVTGSNSELSSNSFSGFSASTGASESSDDSSVCESVTSNEHERCEGHIFVDPTIDIFYTTCNSIGESIPLSPKFASLVDLVDGNPAMHKLNQIRPDFSKQESKLTLNGSSGLRMRKGATIEPSTVSSGFWNTTLDSTRIKDDSNSDPLASHYDDSAPKSVKNNMPCARSASSENEGVGCADALSIHNLQTVGLRVSNHVINTGSTLKSAQSRCLPHAFADTKLVSRTEEHSHYSTKCGNNGIQSGSATSNSKNDLKTSVLKVSDQLRGSKLSKPFPSAVGSDITGKYSDKGLFPYDLFVKLYNWNRVELQPFGLINCGNSCYANAVLQCLAVTPPLTAYLLQGLHSKSCANKKWCFTCEFESLILKSKDTNSPMSPLGILSQLQNIGSQLGNGREEDAHEFLRLVVETMQSVCLMESGDNMSDSLKEETNLMGLTFGGYLQSKIKCMKCGGKSERQERMMDLTVEIEGEIATLEEALRQFTSAETLDGENKYRCVSRCKSYEKAKKKMTVLEAPNVLTIALKRFQSGKFGKLNKPIRFPEILDLAPFMSGTSDLPIYRLYGVVVHLDIMNAAFSGHYVCYVKNFQSRWFKVDDSVVTAVELESVLAKGAYMLFYSRCSPRAPRLIRNSIVSSDSKWKLNGKTATMKSRRLSTGAGVNLTSPGGSASLDTLYSKFLHSKRILEEDSSSDNSSLISSNSDEGSCSTDSTADSTSTDDFADYIFGDVGRGAGGMLRNSDSNICPALPSFPHSGYFPSSDIDQHDSVVLPHSTGFQPSPSEEGLLYRNRVVDVKRSGGGVSHFHLDTNIEHRKLDTSSSSISFRETDSVFNDRNSGVSCTKSRYRTD 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02024 1036 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1024 - -
Gma02g02024 1036 Pfam MYND finger 82 119 IPR002893 -
Gma02g02024 1036 MobiDBLite consensus disorder prediction 425 445 - -
Gma02g02024 1036 ProSiteProfiles Zinc finger MYND-type profile. 82 119 IPR002893 -
Gma02g02024 1036 Gene3D Cysteine proteinases 498 819 - -
Gma02g02024 1036 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 505 810 IPR028889 -
Gma02g02024 1036 SUPERFAMILY HIT/MYND zinc finger-like 79 121 - -
Gma02g02024 1036 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 19 1024 - -
Gma02g02024 1036 SUPERFAMILY Cysteine proteinases 501 813 IPR038765 -
Gma02g02024 1036 Gene3D - 73 122 - -
Gma02g02024 1036 MobiDBLite consensus disorder prediction 427 445 - -
Gma02g02024 1036 MobiDBLite consensus disorder prediction 333 365 - -
Gma02g02024 1036 MobiDBLite consensus disorder prediction 879 903 - -
Gma02g02024 1036 MobiDBLite consensus disorder prediction 143 167 - -
Gma02g02024 1036 Pfam Ubiquitin carboxyl-terminal hydrolase 505 807 IPR001394 GO:0004843|GO:0016579
Gma02g02024 1036 MobiDBLite consensus disorder prediction 190 227 - -
Gma02g02024 1036 ProSitePatterns Zinc finger MYND-type signature. 82 119 IPR002893 -
Gma02g02024 1036 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 506 521 IPR018200 GO:0004843|GO:0006511
Gma02g02024 1036 MobiDBLite consensus disorder prediction 143 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02024 Gma-Chr2 45807538 45813651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02024 485 828 Miscellaneous Gene Families AT4G31670 50.578 2.22e-120 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02024 K11855 - gmx:100815856 1972.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02024 02 45807538 45813651 Gma02g02024 02 45807538 45813651 ECH
Gma14g01805 14 48454280 48460912 Gma02g02024 02 45807538 45813651 GST