Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00518 ATGTTCCTTCTTAGAAGGCAAACCCAGAATAACCAGGAGAATGATTCCTCATATCAAGATACAAAGGTGGCTGAACTCAAGACAGGTCTTGGGCCCCTCTCTGGTCGTCGATTAAAGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCAAGAAACTGGAATGTTGATAAAGCTAAGAAAATGCTGGAGGAAACACTCAAGTGGAGGGCAACTTATAAGCCAGAGGAAATCCGTTGGGCTGAAATAGCACATGAGGGTGAAACAGGCAAAGTCTCCAGAGCTAACTTCCATGATCGACTTGGGAGGACTGTGCTTATTATGAGGCCAGGGATGCAGAACACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAAAATGCTATCCTAAATCTTTCTGAAGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTATCACTTAGTACAAATATGTCTGTTAAAACATCTCGTGATATTATTCACATTTTACAAAACCACTATCCAGAAAGGCTTGCTATTGCTTTTATGTACAATCCACCAAGAATATTCCAGGCTTTCTGGAAGGCCATCAGATTCTTCCTGGATCCCAAGACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATAAAATCACTCTTCCCCACGGAAAACCTTCCAAGTGAATTTGGGGGGAAAACAAGTCTAAACTATGACCATGAAGAGTTCTCGCGATTGATGACCGAGGATGATGTGAAAACTGCCAAGTTCTGGGGACTTGATGAGAAGCCCTTCAACCCTCCTAAGAAGGGGCATTCGGGAGCAGAGGTGGCACCGGAACCAGTGCCTGTTGAGGCAGTAGTTACCGAAGCATCTTTATCACAATCGCTGCTACAGTCCTCTCCTTTTAGGTTGATCGAGCATAATAAGCACTCACACTTCTCAGGTTTTGTGCTTGAAGGTTGTGGAACTCTTCATCAGAACCCTTCTTTCGAATCCTTCCCGCTCTCTCCACTCTTTCCCCTCTCCGATTCAATTCCCAAGCAGATCCCTCTCTCCGAGCGTTTTGCTGCTGTCATTATGAGGATAAGAGATCCCAAAACAACAGCACTTATTTTTGCTTCTGGCAAGATGGTTTGTACTGGAGCTAAGAGTGAACAACAGTCTAAATTGGCAGCAAGGAAGCTTGGCTTCCCAGCCAAATTTAAGGATTTCAAAATTCAGATCATTGTCGGCTCTTGTGATGTCAAGTTCCCCATATGCTGGAGGGTCTTGCATATTCCCATGGTGCTTTCTCAAGTTATGATACAGAGCTGTTTCCAGGGCTAA 1350 0.437 MFLLRRQTQNNQENDSSYQDTKVAELKTGLGPLSGRRLKYCTDACLRRYLEARNWNVDKAKKMLEETLKWRATYKPEEIRWAEIAHEGETGKVSRANFHDRLGRTVLIMRPGMQNTTSAEDNIRHLVYLLENAILNLSEGQEQMSWLIDFTGLSLSTNMSVKTSRDIIHILQNHYPERLAIAFMYNPPRIFQAFWKAIRFFLDPKTVQKVKFVYPNNKDSVELIKSLFPTENLPSEFGGKTSLNYDHEEFSRLMTEDDVKTAKFWGLDEKPFNPPKKGHSGAEVAPEPVPVEAVVTEASLSQSLLQSSPFRLIEHNKHSHFSGFVLEGCGTLHQNPSFESFPLSPLFPLSDSIPKQIPLSERFAAVIMRIRDPKTTALIFASGKMVCTGAKSEQQSKLAARKLGFPAKFKDFKIQIIVGSCDVKFPICWRVLHIPMVLSQVMIQSCFQG 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00518 449 CDD SEC14 99 240 IPR001251 -
Gma02g00518 449 PRINTS Transcription initiation factor TFIID signature 374 392 IPR000814 GO:0003677|GO:0006352
Gma02g00518 449 PRINTS Transcription initiation factor TFIID signature 355 374 IPR000814 GO:0003677|GO:0006352
Gma02g00518 449 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 361 403 IPR000814 GO:0003677|GO:0006352
Gma02g00518 449 MobiDBLite consensus disorder prediction 1 20 - -
Gma02g00518 449 SUPERFAMILY CRAL/TRIO domain 82 257 IPR036865 -
Gma02g00518 449 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Gma02g00518 449 PANTHER GH16843P 6 294 - -
Gma02g00518 449 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 6 294 - -
Gma02g00518 449 Gene3D - 3 270 IPR036865 -
Gma02g00518 449 SMART sec14_4 87 242 IPR001251 -
Gma02g00518 449 SUPERFAMILY CRAL/TRIO N-terminal domain 10 82 IPR036273 -
Gma02g00518 449 Pfam CRAL/TRIO, N-terminal domain 42 66 IPR011074 -
Gma02g00518 449 Pfam CRAL/TRIO domain 98 239 IPR001251 -
Gma02g00518 449 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Gma02g00518 449 SUPERFAMILY TATA-box binding protein-like 361 412 - -
Gma02g00518 449 Gene3D - 359 414 IPR012295 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00518 Gma-Chr2 5150604 5159761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00518 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.014 3.12e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00518 - - gmx:100800024 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00518 02 5150604 5159761 Gma02g00518 02 5150604 5159761 ECH
Gma02g00518 02 5150604 5159761 Gma16g01285 16 31360591 31364449 ECH
Gma16g01285 16 31360591 31364449 Gma02g00518 02 5150604 5159761 GST