LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma02g00426	ATGGGAAACTTAGCTGCAGAGTCTCTCTGTGCTTTATTGTTGCTTTATTTCTATGGCACACTTTTAGTTAGTGCTAAATACATAAAGTATAATACTGGGGCTGGTGTTGTGCCAGGAAAATTGAATGTTCACTTGGTTCCACACTCCCATGACGATGTTGGTTGGCTGAAAACCGTTGATCAGTACTATGTTGGGTCAAACAATAGTATTCAGGGGGCATGTGTTGAGAATGTGCTGGACTCGGTGGTTGTGTCTCTTCAGAAAGACCCAAATAGAAAGTTTGTGTTTGTCGAAATGGCATTTTTCTATCGATGGTGGGTAGAACAAAGTCCAGAAACACAAGAACAAGTGAAAAAGCTTGTGGATGAGGGGCAGCTAGAATTCATAAATGGTGGATGGTGCATGCACGATGAAGCTGCGACACACTACATTGACATGATTGATCAAACCACTTTGGGCCATCGTTTCATCAAGGATCGGTTTAACAAGACTCCTACTGTTGGATGGCAGATTGATCCATTTGGACACTCTGCTGTGCAGGCTTACCTGCTAGGAGCTGAGCTTGGTTTTGATTCTATACATTTCGCAAGAATTGATTACCAAGACAGAGCTAAGCGCAAAGCTGATAAGTCTCTTGAAGTTGTTTGGCGTGGCTCCAAAACATTTGGTTCTTCATCTCAGATTTTTGCCAATACTTTCCCCGTTCATTATAGTGCTCCAAATGGCTTCAACTTTGAAGTCAATAATCCTGATGTTGATGTTGTTCCCGTGCAGGATGATCCTCTTATTTTCGATTACAACGTGGAACAGCGTGTCCAAGACTTTATTGATGCTGCTACTACCCAAGCAAATGTGACGAGGACAAATCATATAATGTGGACAATGGGTGATGATTTCCAGTACCAATATGCAGAGTCTTGGTTCAAGCAAATGGATAAATTAATTCACTATGTTAATAAGGATGGTAGAGTAAATGCTTTGTATTCCACTCCATCTATTTACACCAATGCCAAGAATGCTGCTAATCAAACTTGGCCACTGAAAACAGATGATTACTTCCCGTATGCCGATAGTCGAAATGCTTATTGGACGGGCTATTTCACCAGTCGCCCGGCCTTAAAGCGATACGTTAGGATGCTAAGTGGATACTATTTGACAGCACGTCAACTTGAATTCTTGGTTGGAAAGAAATCAACTAAATACAATACTTATGACCTTGGAGATGCTCTAGGAATTGCACAACATCATGATGCTGTCAGTGGAACTGCCAAGCAGCATACAACCAATGACTATGCCAAACGATTGGCTATTGGAGCCTCTGAGGCTGAAGCGGTTGTTAGTTCTTCTTTGGCTTGTCTTACTAGAAAACAATCAGGTGATAAGTGTTCAGCACCTGCATCGGCATTTGCCCAGTGTCAATTGTTAAATATTAGTTACTGCCCTCCAGCAGAAGACAACATTCCAGAGGCTAAGAGTTTGGTAGTAGTGGTGTATAACCCACTTGGGTGGAATCGTACTGATATTGTCAAAATACCAGTTAATGATGCTAATCTTGTTGTCAAAGATTCATCGGGCAATAACCTTGAAGTACAATATGTGGATGTGGATGATGTTACGACAAATTTAAGAAAATTCTATGTGAAGGCATACTTGGGGGTTTCTCCAAAACAAGCCCCAAAGTACTGGCTTTTGTTTCAGGTGTCCGTACCTCCACTTGGATGGAGTACTTACTTCATTTCTAAAGCAACTAGAAAAGGGACCAGGAGAAAAGATCTATCTCACCCCAACAGTCAGAAAGGTGACACTATAAATGTAGGATCGGGAAATTTAAAGATGTCCTTTTCCTCAACCTCTGGACAACTCAAAAGGATGTATGATTCCAAAACTGGAGTTGATTTACCTATTCAGCAAAGCTACCTTTGGTATGGATCTAGTGAGGGCGATAGTGATCCTCAGGCTTCTGGTGCATATATATTCCGGCCTAATGGATCGCCTCCAAATATCGTTTCAAGATCAGTGCCTACCAAGGTAATTCGTGGACCACTAGTAGATGAAGTTCATCAGAAATTTAGCTCCTGGATTTACCAGGTTACTAGGCTTTACAAAGACAAAGACCATGCAGAAATCGAATTCACTATTGGTCCAATTCCTACTGATGATGGAGTTGGAAAAGAGGTGATCACACGAATGACAGCAAATATGGCCACAAACAAGGAGTTTTATACGGATTCCAATGGAAGAGATTTTCTAAAACGAGTTCGAGATCATAGGGAAGATTGGCCTCTGCAAGTAACTCAACCAGTAGCAGGAAACTATTACCCAATTAATCTTGGAATTTATACTAAGGATAAGAAATCTGAGTTCTCAGTCTTAGTTGATCGTGCCACTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGGCGTATTCTCCATGATGATAGTCGAGGAGTTGGGGAACCACTTGATGAACAAGTTTGCGTGAACAACAATAATACATGTGAAGGACTAACAGTCAGAGGAAATTATTATATCAGCATCCACAAGCTTGGAGCTGGTTCACGCTGGCGTCGTACAACTGGTCAGGAAATTTATTCTCCATTCTTAGTGGCTTTCACACATGAGAACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAGCCAAGTGAAGATGCTGAGTATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAAATGAAGAGGATGACATGGAAGGTTGAAGGGGACAAAGGACAAGAACCTCTGGCAATTAGGGGTGGCCCTGTCAGCTATCACAATTTGGTTGTTGAGCTTGGCCCCATGGAAATACGAACTTTCCTTTTGAAATTTTAA	3039	0.4159	MGNLAAESLCALLLLYFYGTLLVSAKYIKYNTGAGVVPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSVVVSLQKDPNRKFVFVEMAFFYRWWVEQSPETQEQVKKLVDEGQLEFINGGWCMHDEAATHYIDMIDQTTLGHRFIKDRFNKTPTVGWQIDPFGHSAVQAYLLGAELGFDSIHFARIDYQDRAKRKADKSLEVVWRGSKTFGSSSQIFANTFPVHYSAPNGFNFEVNNPDVDVVPVQDDPLIFDYNVEQRVQDFIDAATTQANVTRTNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKDGRVNALYSTPSIYTNAKNAANQTWPLKTDDYFPYADSRNAYWTGYFTSRPALKRYVRMLSGYYLTARQLEFLVGKKSTKYNTYDLGDALGIAQHHDAVSGTAKQHTTNDYAKRLAIGASEAEAVVSSSLACLTRKQSGDKCSAPASAFAQCQLLNISYCPPAEDNIPEAKSLVVVVYNPLGWNRTDIVKIPVNDANLVVKDSSGNNLEVQYVDVDDVTTNLRKFYVKAYLGVSPKQAPKYWLLFQVSVPPLGWSTYFISKATRKGTRRKDLSHPNSQKGDTINVGSGNLKMSFSSTSGQLKRMYDSKTGVDLPIQQSYLWYGSSEGDSDPQASGAYIFRPNGSPPNIVSRSVPTKVIRGPLVDEVHQKFSSWIYQVTRLYKDKDHAEIEFTIGPIPTDDGVGKEVITRMTANMATNKEFYTDSNGRDFLKRVRDHREDWPLQVTQPVAGNYYPINLGIYTKDKKSEFSVLVDRATGGASIKDGEVELMLHRRILHDDSRGVGEPLDEQVCVNNNNTCEGLTVRGNYYISIHKLGAGSRWRRTTGQEIYSPFLVAFTHENSENWKSSHLTKGTIMDPNYSLPPNIALITLEELDGGIVLLRLAHLYEPSEDAEYSTLTKVELKKLFAMKTIKELKEVSLSSNQEKSEMKRMTWKVEGDKGQEPLAIRGGPVSYHNLVVELGPMEIRTFLLKF	1012

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma02g00426	1012	Pfam	Alpha mannosidase middle domain	361	453	IPR015341	GO:0004559\|GO:0006013
	Gma02g00426	1012	SMART	Alpha_mann_mid_2	361	435	IPR015341	GO:0004559\|GO:0006013
	Gma02g00426	1012	PANTHER	ALPHA-MANNOSIDASE	12	1012	-	-
	Gma02g00426	1012	SUPERFAMILY	Galactose mutarotase-like	469	1012	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Gma02g00426	1012	Gene3D	-	894	1012	-	-
	Gma02g00426	1012	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	904	1009	IPR041147	-
	Gma02g00426	1012	Pfam	Glycosyl hydrolases family 38 N-terminal domain	42	356	IPR000602	GO:0004559\|GO:0006013
	Gma02g00426	1012	PANTHER	ALPHA-MANNOSIDASE	12	1012	-	-
	Gma02g00426	1012	Gene3D	-	482	604	IPR013780	-
	Gma02g00426	1012	Gene3D	Glycoside hydrolase 38, N terminal domain	41	324	IPR027291	-
	Gma02g00426	1012	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	361	460	IPR028995	-
	Gma02g00426	1012	Gene3D	Glycoside hydrolase family 38, central domain	404	459	IPR037094	GO:0004559\|GO:0006013
	Gma02g00426	1012	Gene3D	-	605	870	-	-
	Gma02g00426	1012	SUPERFAMILY	Glycoside hydrolase/deacetylase	30	357	IPR011330	GO:0005975
	Gma02g00426	1012	CDD	GH38N_AMII_LAM_like	41	320	-	-
	Gma02g00426	1012	Pfam	Glycosyl hydrolases family 38 C-terminal domain	608	820	IPR011682	GO:0004559\|GO:0006013
	Gma02g00426	1012	Gene3D	Glycoside hydrolase family 38, central domain	325	403	IPR037094	GO:0004559\|GO:0006013

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma02g00426	Gma-Chr2	4344971	4354762	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma02g00426	10	959	Glycoside Hydrolase	AT3G26720	60.756	0.0	1207

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma02g00426	K01191		-	gmx:100775419	2006.88

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma02g00426	02	4344971	4354762	Gma02g00426	02	4344971	4354762	ECH
	Gma16g01181	16	29320401	29330697	Gma02g00426	02	4344971	4354762	GST