Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00257 ATGGGACTTCTTCAACGTCCCTTGTGTTGCCACTCACAACAAGACCAACAACAACAACCACCACAATCCCATGATCACCTTCATTTCGAATCATCAACCTCATCCTCCCTCTCTTCACAAGCAAGCCTCCCTTCCATTCCCTCCCTCACCCCACAAAAACTGCACCACCCCGAAGAACAACCGCAAACCACCCACCACAAACTTGTAACTACCGTCAAGGGCCACACCTCCACGATCTTCTCCCTCGCCCTGCACGGCAAGTCTCTCTACAGCGCCTCCTCGAACGGAGAAATAAGAGCATGCAGCAGAGACCCTACATCGACCGAATTAAAATATATAAGTGGAGAACAACCTCTACCTAATACCACTATTGTTGTGAACAGCAACGCGCCAATCAAGTCCCTCATCGTATCACACGACAAGCTATTCACGGCTCACCAAGACCACAAAATCCGCGTCTGGAAAACAACCGACCAACCCGGTAATAATAATAACAACCCCAACTACTACAAATGCGTCGCCTCGCTTCCCACGCTCCACGACCGGTTCTCCAAACTCTTCTCCTCCGAGAACTACGTCGAGATTCGCCGCCACAAGAAGCGCACGTGGGTGCATCACGTGGACACCGTCTCCGCCCTCGCACTTTCCCAAGACGGGTCTCTTCTCTACTCTGCGTCGTGGGACAGAACATTCAAAATCTGGCGAACCTCGGATTTCAAGTGTCTGGAGTCTGTTAAAAACGCGCACGAGGATGCAATTAATTCCTTAATTTTGTCGAATAACGGTATTGTCTATACAGGTTCTGCGGATACGAAAATAAAGATGTGGAAGAAGTTAGAAGGAGATAAAAAGCATTCTCTAATAGGAACATTGGAGAAGCATAAATCTGCTGTTAACGCTCTTGCTCTTAACTCTGATGGGTCAGTGTTGTATTCAGGTGCGTGTGATAGGTCAATTTTAGTGTGGGAGGGTGATGAAGATAATAACAATAACATGGTGGTGGTGGGTGCTTTAAGGGGGCACACGAAAGCCATACTGTGTTTGGTGGTGGAGTCTGACTTGGTGTGTAGCGGATCTGCTGATAACAGTGTTAGGATATGGAGGAGAAGCGTTGAGAATGAGAAGAAGAGTTACTATTCGTGTTTGGCGGTGCTGGAAAGTCATCGACGACCCGTGAAGTGTTTGGCTATGGCTGTTGACTCCAACAGTGGTGGTGGTGGTGGTGGTCCTCATGAGGATGATGATAGTAGGTCTTATCTGGTTTACAGTGCAGGTTTGGATTGTGACATTAAAGTCTGGCAAATACGCGTTCCCTTGTGA 1320 0.4811 MGLLQRPLCCHSQQDQQQQPPQSHDHLHFESSTSSSLSSQASLPSIPSLTPQKLHHPEEQPQTTHHKLVTTVKGHTSTIFSLALHGKSLYSASSNGEIRACSRDPTSTELKYISGEQPLPNTTIVVNSNAPIKSLIVSHDKLFTAHQDHKIRVWKTTDQPGNNNNNPNYYKCVASLPTLHDRFSKLFSSENYVEIRRHKKRTWVHHVDTVSALALSQDGSLLYSASWDRTFKIWRTSDFKCLESVKNAHEDAINSLILSNNGIVYTGSADTKIKMWKKLEGDKKHSLIGTLEKHKSAVNALALNSDGSVLYSGACDRSILVWEGDEDNNNNMVVVGALRGHTKAILCLVVESDLVCSGSADNSVRIWRRSVENEKKSYYSCLAVLESHRRPVKCLAMAVDSNSGGGGGGPHEDDDSRSYLVYSAGLDCDIKVWQIRVPL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00257 439 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515
Gma02g00257 439 Pfam WD domain, G-beta repeat 201 234 IPR001680 GO:0005515
Gma02g00257 439 Pfam WD domain, G-beta repeat 336 367 IPR001680 GO:0005515
Gma02g00257 439 Pfam WD domain, G-beta repeat 240 277 IPR001680 GO:0005515
Gma02g00257 439 SMART WD40_4 284 323 IPR001680 GO:0005515
Gma02g00257 439 SMART WD40_4 378 434 IPR001680 GO:0005515
Gma02g00257 439 SMART WD40_4 238 277 IPR001680 GO:0005515
Gma02g00257 439 SMART WD40_4 117 155 IPR001680 GO:0005515
Gma02g00257 439 SMART WD40_4 331 368 IPR001680 GO:0005515
Gma02g00257 439 SMART WD40_4 65 102 IPR001680 GO:0005515
Gma02g00257 439 SMART WD40_4 196 235 IPR001680 GO:0005515
Gma02g00257 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 277 IPR001680 GO:0005515
Gma02g00257 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Gma02g00257 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 234 - -
Gma02g00257 439 MobiDBLite consensus disorder prediction 1 65 - -
Gma02g00257 439 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 438 IPR045182 -
Gma02g00257 439 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 25 438 - -
Gma02g00257 439 CDD WD40 68 434 - -
Gma02g00257 439 MobiDBLite consensus disorder prediction 9 49 - -
Gma02g00257 439 Gene3D - 190 282 IPR015943 GO:0005515
Gma02g00257 439 Gene3D - 283 438 IPR015943 GO:0005515
Gma02g00257 439 Gene3D - 5 189 IPR015943 GO:0005515
Gma02g00257 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 367 IPR001680 GO:0005515
Gma02g00257 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 291 323 - -
Gma02g00257 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 367 - -
Gma02g00257 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 323 IPR001680 GO:0005515
Gma02g00257 439 SUPERFAMILY WD40 repeat-like 65 435 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00257 Gma-Chr2 2685443 2687075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g00257 186 382 Acyl Lipid Metabolism Gene Families AT3G18860 28.283 1.04e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00257 - - gmx:100784166 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00257 02 2685443 2687075 Gma02g00257 02 2685443 2687075 ECH
Gma01g00336 01 3981878 3983417 Gma02g00257 02 2685443 2687075 GST