Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00336 ATGGGACTTCTTCAACGTCCCTTGTGTTGCCACACACAACAACCACAATCCCATCATCACCTTCATTCCGAGTCATCAACTTCATCCTCCCTCTCTTCACAACCAAGCCTCCCCTCTGTCCCCTCCCTCACCCCACAAAAACCGCATTTCCTCGAAGAACAACCCCAAACCACCCACCACAGACTCATCACCGCCGTCAAGGGCCACACCTCACCAATCTTCTCCCTCGCCCTCCACGGCAAGTCCCTCTATAGCGCCTCCTCCGGCGGCGAAATAAGAGCATGCAATAGAAATCCCACATCGGCTAATGATATAATCACATTAAAATATATAAGTAATGTCAACACCAACACTGTTGTCGCGACCAGCAACGCGCCAATCAAGTCCCTCATCGTATCCCACGACAAGCTATTCACTGCTCACCAAGACCACAAAATCCGTGTCTGGAAAACAACAACCGACCAACCCGGTAACAACAACAACAACAACCCGAACTACTACAAATGCGTCGCCACGCTTCCCACCCTCCACGACCGTATCTCCAAACTCTTCTCCTCCAAGAACTACGTCGAGATTCGCCGCCACAAGAAGCGCACGTGGGTGCATCACGTGGACGCCGTCTCCGCCCTCGCGCTTTCCCGAGACGGGTCCCTCCTCTACTCCGCTTCATGGGACCGAACATTCAAGATCTGGCGAACCTCGGATTTCAAGTGTCTGGAGTCAGTTAAAAACGCGCACGAGGACGCAATTAATTCCTTAGTTTTGTCGAATAACGGTTTTGTCTACACTGGTTCCGCGGACACTAGAATAAAGATGTGGAAGAAGTTAGAGGGAGAGAAAAAGCATTCTCTAATAGGAACCTTGGAGAAGCATAAATCCGCTGTTAACGCTCTTGCTCTTAACTCCGATGGATCAGTGTTATATTCAGGTGCGTGTGATAGGTCAATTTTAGTGTGGGAGAGTGATCAAAATGAAAATAATAACACCATGGTGTTGGTGGGTGCTTTGAGGGGGCACACAAAAGCGATACTGTGTTTGGTGGTGGTGGCGGATTTGGTGTGTAGTGGATCTGCTGATAACAGTGTTAGGGTATGGAGGAGAGGTGCTGAGAAGAGTTATTCGTGTTTGGCGGTGTTTGAAGGTCATCGACGACCCGTGAAGTGTTTGGCTATGGCTGTTGACTCCAACAGTGGTGGTCCTCGTGAGGATGATCATAATAGTAGCTCTTATCTGGTTTACAGTGCAGGTTTAGATTGTGAGATTAAAGTGTGGCAAATACGCGTTCCTTCGCTGTCGTTGTGA 1302 0.4923 MGLLQRPLCCHTQQPQSHHHLHSESSTSSSLSSQPSLPSVPSLTPQKPHFLEEQPQTTHHRLITAVKGHTSPIFSLALHGKSLYSASSGGEIRACNRNPTSANDIITLKYISNVNTNTVVATSNAPIKSLIVSHDKLFTAHQDHKIRVWKTTTDQPGNNNNNNPNYYKCVATLPTLHDRISKLFSSKNYVEIRRHKKRTWVHHVDAVSALALSRDGSLLYSASWDRTFKIWRTSDFKCLESVKNAHEDAINSLVLSNNGFVYTGSADTRIKMWKKLEGEKKHSLIGTLEKHKSAVNALALNSDGSVLYSGACDRSILVWESDQNENNNTMVLVGALRGHTKAILCLVVVADLVCSGSADNSVRVWRRGAEKSYSCLAVFEGHRRPVKCLAMAVDSNSGGPREDDHNSSSYLVYSAGLDCEIKVWQIRVPSLSL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00336 433 SMART WD40_4 372 425 IPR001680 GO:0005515
Gma01g00336 433 SMART WD40_4 116 150 IPR001680 GO:0005515
Gma01g00336 433 SMART WD40_4 281 320 IPR001680 GO:0005515
Gma01g00336 433 SMART WD40_4 235 274 IPR001680 GO:0005515
Gma01g00336 433 SMART WD40_4 329 366 IPR001680 GO:0005515
Gma01g00336 433 SMART WD40_4 59 96 IPR001680 GO:0005515
Gma01g00336 433 SMART WD40_4 193 232 IPR001680 GO:0005515
Gma01g00336 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 329 IPR001680 GO:0005515
Gma01g00336 433 Gene3D - 280 432 IPR015943 GO:0005515
Gma01g00336 433 Pfam WD domain, G-beta repeat 237 274 IPR001680 GO:0005515
Gma01g00336 433 Pfam WD domain, G-beta repeat 284 319 IPR001680 GO:0005515
Gma01g00336 433 Pfam WD domain, G-beta repeat 374 424 IPR001680 GO:0005515
Gma01g00336 433 Pfam WD domain, G-beta repeat 198 231 IPR001680 GO:0005515
Gma01g00336 433 Pfam WD domain, G-beta repeat 333 365 IPR001680 GO:0005515
Gma01g00336 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 283 IPR001680 GO:0005515
Gma01g00336 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 365 IPR001680 GO:0005515
Gma01g00336 433 MobiDBLite consensus disorder prediction 12 40 - -
Gma01g00336 433 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 14 429 - -
Gma01g00336 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 365 - -
Gma01g00336 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 231 - -
Gma01g00336 433 SUPERFAMILY WD40 repeat-like 62 426 IPR036322 GO:0005515
Gma01g00336 433 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Gma01g00336 433 MobiDBLite consensus disorder prediction 12 48 - -
Gma01g00336 433 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 14 429 IPR045182 -
Gma01g00336 433 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 320 - -
Gma01g00336 433 Gene3D - 187 279 IPR015943 GO:0005515
Gma01g00336 433 Gene3D - 51 186 IPR015943 GO:0005515
Gma01g00336 433 CDD WD40 62 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00336 Gma-Chr1 3981878 3983417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00336 236 426 Miscellaneous Gene Families AT5G08390 22.843 7.03e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00336 - - gmx:100778775 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00336 01 3981878 3983417 Gma01g00336 01 3981878 3983417 ECH
Gma01g00336 01 3981878 3983417 Gma02g00257 02 2685443 2687075 GST