Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02254 ATGGCACAGAAGAGATTCATCATCGAGGTCGAGAAGGCGAAGGAGGCGAGCGAAGGAAGGCCTTCGAGAGGACCTGTCTATCGTAGCCTCTTCGCCAAGGATGGATTCCCTGCTCCTATCCAAGGTCTCAATAGTTGCTGGGACGTTTTTCGATTGTCTGTTGAGAAATATCCATCAAATCCAATGCTTGGTCGCCGGGAAATTGTGGATGGGAAGCCGGGCAAGTACAAGTGGCTAACATACAAAGAAGTATATGACCAGGTGATGAAAGTTGGGAATTCTATCCGCAGCTGTGGTTATGGAGAAGGTGTAAAATGTGGTATTTACGGTGCTAATTCTGCAGAATGGATTATGAGCATGCAGGCTTGCAATGCTCATGGACTTTATTGTGTTCCTTTATATGATACCTTGGgtgctggggctatagagtttattatatgccatgcagaggtctcaattgcatttgcagaagaaaagaagatacctgagctattgaagacatttccaaatgcaacaaagtatctcaagacaattGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGATATCAAATGAGAGTATTATTACTCTCTTAGCTGGGGTTAAGCGACTGTTGGAGAGTGTAAATGAACAATTGACTGAGAAGGATGTATACATATCATACCTTCCACTTGCACATATATTTGATAGGGTCATTGAGGAGACATTCATATGGCATGGTGCTTCAATAGGTTTCTGGCGTGGGGATGTCAAATTGTTAATTGAAGATGTTGGCGAACTAAAACCAACTATTTTCTGTGCTGTTCCCCGTGTGCTTGATAGAGTGTACTCAGGTTTGACGCAGAAGATTTCTTCTGGGGGCTTCTTGAAGAAGACATTATTCAACTTTGCTTATTCATATAAGCTTAATAACATGAAGAAAGGGCTTAGACATGGAGAAGCATCTCCACTTCTTGATAAAATTGTGTTTGACAAGGTAAAGCAAGGTTTAGGGGGTAGAGTACGTCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAGAAATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGATGTTTGCCTGGAATCTGTTCCTGAAATGGGATACGATGCCCTAGCAAGTACACCAAGAGGAGAAATTTGTGTAAAGGGAAAAACCTTGTTTGCAGGGTACTACAAACGTGAAGACCTCACTAAAGAGGTTCTGATTGATGAATGGTTCCATACAGGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATCGGAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTCGAAAACCTGGAGAATATTTACGGTCAAGTTTCTTCTATTGAATCTATATGGGTTTATGGAAACAGTTTTGAGGCCTTCCTTGTGGCTGTTGTTAACCCCAGTAAGCAAGCACTTGAACATTGGGCCCAAGAAAATGGTATATCCATGGACTTCAATTCTCTCTGTGAAGATGCTCGAGCAAAAAGTTACATAATTGAAGAGCTCTCAAAGATTGCGAAGGAAAAGAAGTTGAAAGGTTTTGAGTTTATAAAAGCAGTTCACCTTGACTCAATTCCATTTGACATGGAACGTGACCTTATCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATACTATCAGAATGCCATTGACAACATGTATAAGAGTGGAAGTAAACCCAGTGCCTGA 1989 0.3896 MAQKRFIIEVEKAKEASEGRPSRGPVYRSLFAKDGFPAPIQGLNSCWDVFRLSVEKYPSNPMLGRREIVDGKPGKYKWLTYKEVYDQVMKVGNSIRSCGYGEGVKCGIYGANSAEWIMSMQACNAHGLYCVPLYDTLGAGAIEFIICHAEVSIAFAEEKKIPELLKTFPNATKYLKTIVSFGKVTPEQKQEVENSGLEIYSWDEFLQVGQNQSFDLPIKKRSDICTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVNEQLTEKDVYISYLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLIEDVGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSYKLNNMKKGLRHGEASPLLDKIVFDKVKQGLGGRVRLILSGAAPLSAHVEGYLRVVTCAHVLQGYGLTETCAGTFVSLPNEIEMLGTVGPPVPNVDVCLESVPEMGYDALASTPRGEICVKGKTLFAGYYKREDLTKEVLIDEWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIYGQVSSIESIWVYGNSFEAFLVAVVNPSKQALEHWAQENGISMDFNSLCEDARAKSYIIEELSKIAKEKKLKGFEFIKAVHLDSIPFDMERDLITPTYKKKRPQLLKYYQNAIDNMYKSGSKPSA 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02254 662 Gene3D - 42 516 IPR042099 -
Gma01g02254 662 Pfam AMP-binding enzyme 57 524 IPR000873 -
Gma01g02254 662 SUPERFAMILY Acetyl-CoA synthetase-like 42 655 - -
Gma01g02254 662 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 254 656 - -
Gma01g02254 662 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 3 52 - -
Gma01g02254 662 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 52 252 - -
Gma01g02254 662 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Gma01g02254 662 CDD LC-FACS_euk 74 655 IPR045311 GO:0004467|GO:0006631
Gma01g02254 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 52 252 - -
Gma01g02254 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 254 656 - -
Gma01g02254 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 3 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02254 Gma-Chr1 57719964 57729222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02254 3 656 Acyl Lipid Metabolism Gene Families AT4G23850 75.688 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02254 K01897 - gmx:100814965 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02254 01 57719964 57729222 Gma01g02254 01 57719964 57729222 ECH
Gma01g02254 01 57719964 57729222 Gma11g00162 11 1251371 1258493 GST
Gma01g02254 01 57719964 57729222 Gma05g02110 05 42324654 42332661 PCT