LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma01g02203	ATGGTGAATCGTCGACGCCTCACCCGGGTGGCGACGAGCGACGATGAAGACGAGGCACCGCGTCCACAACGCACGCGGAAGAGGATGAGGCTTATCGAGGAAGATAACGATGATGACGAGAATGAAGAAGAGAAACAACAAGAGGTGCCGGAACTGCCTCAGCCTGCGGAGGACGCTAAGCCTCTTGGCGAACCCGTTAGGGTTTCGGGAAAAGGAAGAGGAAGGAAGAGGCACTATGATTCCTTCGAGTTCGATGGCATCCAATATATTCTCGAGGATCCTGTTCTTCTTGTACCCGAGGAGAAAGGCCAGAAGCCATATGTTGCAATTATTAAGGACATTACGCAGTCTATCAGTGGCAACGTGAAAGTGACGGGGCAGTGGTTTTATCGTCCCGAAGAAGCCGAGAAAAAAGGTGGTGGAAACTGGCAATCGTGTGATACCAGGGAACTGTTTTATAGTTTCCACCGTGACGATGTTCCTGCGGAGGCTGTTATGCACAAGTGTGTGGTACATTTTGTTCCCAGACACAAACAGCTTCCAAAGCGTAAGGATCACCCGGGGTTTATTGTACAGAAGGTGTATGACACTGTGGAAAGAAAGCTCTGGAGGCTGAGTGATAAGGATTATGAGGATATTAAGCAGCAAGAGATTGATGTGCTTGTTGAGAAGACTCTGCAACGTATTGGTGAACTACTTGACCTTGAGCCTGAGGAAGCCCCTGATGACGATGAGGATCAATTGAAAAATAGAAAAAGCTTAAGGAGAAAGAGTGTTTCACCTCTTGATGTTTCAAAGGAGGAAGAAGAAACTCTTAAGAGTGAACAACATCCAAAGTCTGAAACACCAGCGGGTTGCATAACTAATCCCTCAGAGTATTATCGGATATTGGTAGAATTCAATGCACTAACTGGAGATAGCCATCGAGACAAATGGTTGGAGAGGTTGCTTCAACGCATTCATTACATGTGTGATTCTAATGATAGCAAAGAAAGGGACAAAGGATTAGGAAATGTCAATTCTGATGAAATCAACGGTGGAAGCAAGCATAGAAGTTCAGAGTCAGCAAATGTCTGTCAAGATAAGGTTCAGAAGAGTTCCAAGTCTTTTATTTGGCCAGATGCTGGTGTTTCAGCCATGGTTGCTCTCGAAAAAGCTTCTCATGATGCTCTCTCATCAGATTCTATGAAGTACAACCAAAAGTTGCGCCAATTAGCTTTTAATTTCCAGAAAAATGCAGTGTTAGCACGCCGTCTATTAAGTGGAGAGTTGGAGCCTTCAAAAATATTAAATATGACACCCAATGAATTAAAGGAGGGTTTGGTTGCTGAGGAAAAAACCAAGGAGGAGCCTGACAAGATCCAGCACTTGCAAATGACAGATGCTCGCTGCTCAAAATGCATGGATTGTAAGGTGGCCTTGAGAGAGATTATCCAAGCTGGAAATAATGAACGTTATCAGCTGGAATGTGTTTCCTGTGGTCATTCCTGGTATGCCTCCCGGGATGAGGTGTCTATGCTGACCATAGATGCATCAGATTCTAAGGGAAACATAGGCACAGCGCTATAG	1569	0.4512	MVNRRRLTRVATSDDEDEAPRPQRTRKRMRLIEEDNDDDENEEEKQQEVPELPQPAEDAKPLGEPVRVSGKGRGRKRHYDSFEFDGIQYILEDPVLLVPEEKGQKPYVAIIKDITQSISGNVKVTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAEAVMHKCVVHFVPRHKQLPKRKDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDVLVEKTLQRIGELLDLEPEEAPDDDEDQLKNRKSLRRKSVSPLDVSKEEEETLKSEQHPKSETPAGCITNPSEYYRILVEFNALTGDSHRDKWLERLLQRIHYMCDSNDSKERDKGLGNVNSDEINGGSKHRSSESANVCQDKVQKSSKSFIWPDAGVSAMVALEKASHDALSSDSMKYNQKLRQLAFNFQKNAVLARRLLSGELEPSKILNMTPNELKEGLVAEEKTKEEPDKIQHLQMTDARCSKCMDCKVALREIIQAGNNERYQLECVSCGHSWYASRDEVSMLTIDASDSKGNIGTAL	522

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma01g02203	522	MobiDBLite	consensus disorder prediction	8	34	-	-
	Gma01g02203	522	Pfam	BAH domain	88	202	IPR001025	GO:0003682
	Gma01g02203	522	MobiDBLite	consensus disorder prediction	236	286	-	-
	Gma01g02203	522	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	521	-	-
	Gma01g02203	522	SMART	mid_6	306	447	IPR003618	GO:0006351
	Gma01g02203	522	MobiDBLite	consensus disorder prediction	1	75	-	-
	Gma01g02203	522	Gene3D	-	296	439	IPR036575	GO:0006351
	Gma01g02203	522	ProSiteProfiles	BAH domain profile.	87	206	IPR001025	GO:0003682
	Gma01g02203	522	SUPERFAMILY	Elongation factor TFIIS domain 2	303	438	IPR036575	GO:0006351
	Gma01g02203	522	SMART	BAH_4	87	206	IPR001025	GO:0003682
	Gma01g02203	522	MobiDBLite	consensus disorder prediction	341	358	-	-
	Gma01g02203	522	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	521	-	-
	Gma01g02203	522	Pfam	Transcription factor S-II (TFIIS), central domain	304	456	IPR003618	GO:0006351
	Gma01g02203	522	MobiDBLite	consensus disorder prediction	327	358	-	-
	Gma01g02203	522	CDD	BAH_plant_3	69	215	-	-
	Gma01g02203	522	MobiDBLite	consensus disorder prediction	244	277	-	-
	Gma01g02203	522	Gene3D	-	71	295	IPR043151	-
	Gma01g02203	522	ProSiteProfiles	TFIIS central domain profile.	308	465	IPR003618	GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma01g02203	Gma-Chr1	57264828	57269538	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma01g02203	-		-	gmx:100776280	1008.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma01g02203	01	57264828	57269538	Gma01g02203	01	57264828	57269538	ECH
	Gma01g02203	01	57264828	57269538	Gma08g00137	08	1157191	1162590	PCT