Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02114 ATGGCGGAGCCAGGAGACAGGGACGTGATTATAGGAAGAGGTGATGGAGAAGAAGAGTCATGTTCTGGTTTTCAGGGATTGAGGTTTGATATTGGTGGTGGTAGTAGTAGTAGTGGTGGTAAAAGTAGAACCAAAAGTTTTCATCCTCCTATTGAAACGCACTGGGATCTGAATTCAGCAGCAGGGAAAAAGACTTCGTCCCCTATCAAATCATTATTGTCTTACCCGCTCATGAAATTTAGGAAGACTAAAAGCCTTATAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTTGAGTCTTTTCGCCAAATGCTTTTACGAGAAGGTCTCTTGCCACCCAAACACGATGATTATCATACTCTTCTAAGGTTTCTGCGCATGAGGGATTTCGACATGTTAAAATCCAAAGAGATGTTTCAAAACTATCTCAAATGGCGCAAGGATTTTCGAGTGGACGTGCTTTCAAAGGAATTCAATTTCACGGAGTACGATGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGATACGGCAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGGCAAGTAACCACATTTGAAAGGTTTATCAAACATCATGTGTCAGAGCAAGAAAAAACTCTCAAAGTAAGATTCCCTGCATGTTCACTAGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATATCTAATTTCTCAAAGCCTGCAAGATACCTCTTTATGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCATGTGTTAGGTTTCAATTATCTCAGTGTCCTGCTTGAGGCTATTGATTCAAGTAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCTGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTGTTAATTTGAGAGAAGAGATTGATGGTAAAAGCGAAGATGGTGATGTGGATATAGAAGATTCCTCGATGCCCAAAAAGGTTGATATGCAAAACAAAGATGGCAATTCTCTCAGTCTACTTGAGGAAGCAGCATGTGCGGGATCTGACTCGGCATGTTCTTGTAGATTAGCATTGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATCAAGAATAAAATCAAGACACTGGAAGATGTACTTCAGGACACCAAGATGGCCTTGATAGAACATGCACAACATGAGGAACGACCAAAAATCGAAATGTCCAAAAAGTCCTCCCACTCAATCCTCCTCCATGTTGCACCCCTCCACAATAACCACCACCACCCTCCGCCGCTCCTCTACCGTGCCTGA 1488 0.4167 MAEPGDRDVIIGRGDGEEESCSGFQGLRFDIGGGSSSSGGKSRTKSFHPPIETHWDLNSAAGKKTSSPIKSLLSYPLMKFRKTKSLIMILEGARDPKDKQIVESFRQMLLREGLLPPKHDDYHTLLRFLRMRDFDMLKSKEMFQNYLKWRKDFRVDVLSKEFNFTEYDEVKKCYPHGYHGVDRYGRPVYIERIGMVDLNKLGQVTTFERFIKHHVSEQEKTLKVRFPACSLAAKRHIASTTSILDVNGVGISNFSKPARYLFMEIQKIDSCYYPETLNQLFIINAGSGFRMLWKAVKTFLDVRTVAKIHVLGFNYLSVLLEAIDSSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQVVNLREEIDGKSEDGDVDIEDSSMPKKVDMQNKDGNSLSLLEEAACAGSDSACSCRLALQKIDCLEASLGDIKNKIKTLEDVLQDTKMALIEHAQHEERPKIEMSKKSSHSILLHVAPLHNNHHHPPPLLYRA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02114 495 CDD SEC14 167 335 IPR001251 -
Gma01g02114 495 MobiDBLite consensus disorder prediction 374 390 - -
Gma01g02114 495 MobiDBLite consensus disorder prediction 1 15 - -
Gma01g02114 495 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 166 340 IPR001251 -
Gma01g02114 495 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 39 462 - -
Gma01g02114 495 SMART sec14_4 166 337 IPR001251 -
Gma01g02114 495 MobiDBLite consensus disorder prediction 1 23 - -
Gma01g02114 495 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 39 462 - -
Gma01g02114 495 SMART CRAL_TRIO_N_2 121 146 IPR011074 -
Gma01g02114 495 SUPERFAMILY CRAL/TRIO domain 166 361 IPR036865 -
Gma01g02114 495 Pfam CRAL/TRIO domain 174 334 IPR001251 -
Gma01g02114 495 SUPERFAMILY CRAL/TRIO N-terminal domain 94 161 IPR036273 -
Gma01g02114 495 Coils Coil 424 444 - -
Gma01g02114 495 PRINTS Cellular retinaldehyde-binding protein signature 293 312 - -
Gma01g02114 495 PRINTS Cellular retinaldehyde-binding protein signature 124 146 - -
Gma01g02114 495 PRINTS Cellular retinaldehyde-binding protein signature 326 335 - -
Gma01g02114 495 Gene3D - 85 153 - -
Gma01g02114 495 Gene3D - 155 365 IPR036865 -
Gma01g02114 495 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02114 Gma-Chr1 56480640 56485175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02114 99 331 Acyl Lipid Metabolism Gene Families AT5G47730 31.064 1.25e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02114 - - gmx:100797170 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02114 01 56480640 56485175 Gma01g02114 01 56480640 56485175 ECH
Gma01g02114 01 56480640 56485175 Gma11g00294 11 2364546 2372133 GST