Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02030 ATGGCAACCATTAACCTTTCTTCCGCTACTACGTCTCTCTTCCAATCCAAACACCGAACGAAACGCATTCCACGCCTCCCTACAATCGCCAGAATAACAAACCACATCGAAGGAACTCATCTTAACTCCCCCAACGGCTCTCCCATCCTTGGCAACGCAAACAATTCCCTTGAGGTTCCCTCCAATAACTATATCTCGCTACACTCTTCAGACGTGCGTAGGAAAACTAAGATCGTGTGCACGATAGGTCCTTCTACGAGCTCACGTGATATGATATGGAACCTGGCTCAAGCTGGAATGAACGTGGCGCGTTTGAACATGTCGCATGGGGACCACGCCTCGCACCTCCAAACCATTGATTTGGTGAAAGAATACAATTCTCAGTTTCAAGATAAGGTTGTAGCCATCATGCTCGACACCAAGGGTCCTGAAGTTAGAAGTGGGGATGTAGCTCAACCTATTTTACTTAAAGAGGGACAAGAATTCTGTTTCACCACTATGAGAGGGGTTAGCACACATGACACGGTTAGCGTGAACTACGATGGCTTTGTGAATGATGTGGAGTTCGGAGATGTGTTGCTGGTTGATGgaggaatgatgtctcttgctgttaagtcaaagacaaaagacttggttaaatgtgaagttattgatggtggtgaactgaaatctaggcgtcatttaaatgtccgtggaaaaagtgcaacacttccttccataactgacaaggactgggaagatatcaagtttggggtggacaatcaagtagacttctttgctgtctcatttgtcaaggatgctagagtggtgcacgagttaaaacactacctcaaaagtcataatgccgatatacacgtgattgtaaaaattgaaagtgcagattccataccaaatctccattcgatactttctgcttcagatgggGCCATGGTCGCTCGTGGGGATCTTGGAGCTGAACTTCCAATAGAGGAAGTTCCTTTATTGCAGGAAGACATCATTCGAAGATGTCAAATTatgcaaaagcctgttattgtggcaacaaatatgcttgaaagcatgattaatcatcccacaccaacaagggcagaagtttcagacatcgcaattgcagtaagacaaggtgctgatgctatcatgctttcaggagaaactgcacatggaaaATTTCCATTGAAAGCTGTTAAAGTTATGCACACGGTGGCTCTTAGGAATGAATCCAGTGTTCAAAGTGGTGTTTCTTATCCGAGTCAACTGAGTTCCCATGAAagtcatatgggagaaatgtttgctttccatgcgacaacaatgtctaacactcttaatactcctattattgttttcaccagaacaggatccatggcAATTCTTTTGAGCCATTATAGGCCTTACTCAACAATCTTTGCATTCACAAATGAAGCAAGAATTAAGCAGAGGTTGGCGCTTTATCATGGGGTTATGTCCATATACATGCAATTTTCAAATGATGTAGAAGAGACCTTCTCTAGAGCCCTCAAGCTACTATTGAGTAAGAGTCATTTACACGAGGGACAACATGTCACACTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGAGGAATCCACTCACCACATACAAGTTCGCAAGGTTCATGGATAA 1638 0.2894 MATINLSSATTSLFQSKHRTKRIPRLPTIARITNHIEGTHLNSPNGSPILGNANNSLEVPSNNYISLHSSDVRRKTKIVCTIGPSTSSRDMIWNLAQAGMNVARLNMSHGDHASHLQTIDLVKEYNSQFQDKVVAIMLDTKGPEVRSGDVAQPILLKEGQEFCFTTMRGVSTHDTVSVNYDGFVNDVEFGDVLLVDGGMMSLAVKSKTKDLVKCEVIDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFFAVSFVKDARVVHELKHYLKSHNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQEDIIRRCQIMQKPVIVATNMLESMINHPTPTRAEVSDIAIAVRQGADAIMLSGETAHGKFPLKAVKVMHTVALRNESSVQSGVSYPSQLSSHESHMGEMFAFHATTMSNTLNTPIIVFTRTGSMAILLSHYRPYSTIFAFTNEARIKQRLALYHGVMSIYMQFSNDVEETFSRALKLLLSKSHLHEGQHVTLVQSGAQPIWREESTHHIQVRKVHG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02030 545 Pfam Pyruvate kinase, alpha/beta domain 433 523 IPR015795 -
Gma01g02030 545 PANTHER PYRUVATE KINASE 35 543 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 Gene3D - 74 404 IPR040442 -
Gma01g02030 545 TIGRFAM pyruv_kin: pyruvate kinase 74 543 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 Gene3D - 143 238 IPR015806 GO:0004743|GO:0006096
Gma01g02030 545 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 71 407 IPR015813 GO:0003824
Gma01g02030 545 SUPERFAMILY PK C-terminal domain-like 392 543 IPR036918 -
Gma01g02030 545 Pfam Pyruvate kinase, barrel domain 74 410 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 ProSitePatterns Pyruvate kinase active site signature. 284 296 IPR018209 GO:0004743|GO:0006096
Gma01g02030 545 SUPERFAMILY PK beta-barrel domain-like 143 234 IPR011037 -
Gma01g02030 545 Gene3D - 405 523 IPR036918 -
Gma01g02030 545 PRINTS Pyruvate kinase family signature 132 148 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 PRINTS Pyruvate kinase family signature 256 270 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 PRINTS Pyruvate kinase family signature 286 312 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 PRINTS Pyruvate kinase family signature 313 337 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 PRINTS Pyruvate kinase family signature 338 362 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 PRINTS Pyruvate kinase family signature 363 381 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 PRINTS Pyruvate kinase family signature 382 398 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma01g02030 545 PANTHER PLASTIDIAL PYRUVATE KINASE 3, CHLOROPLASTIC 35 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02030 Gma-Chr1 55719788 55726167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02030 K00873 - gmx:100776984 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02030 01 55719788 55726167 Gma10g02407 10 51682586 51686894 PCT
Gma01g02030 01 55719788 55726167 Gma20g01301 20 39726972 39735126 PCT