Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01678 ATGATGTTGGACGGAACCGAAGACGAAGAGAAGTTTCTCGCCGCCGGAATCGCCGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGGACTCGAACAATCTCAGGGACGCTTTGAAGTATTCGGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCGCCTCACAAGTACTACGAACTATACATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGATGTTCTTCGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCACGCCGGCAACATTTTGCCCCGATTGTATCTCCTCTGTACAGTAGGATCAGTATACATCAAATCCAAGGAAGCTCCTGCAAAGGATGTTCTTAAGGATCTCGTGGAGATGTGTCGAGGCATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGGGATGCGGATACTGTAGCAGATGCTGTAGAGTTCGTGCTCCAAAATTTCACTGAAATGAACAAACTTTGGGTGCGAATGCAACATCAGGGGCCTGCCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGTGATCTTGTTGGAAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTAGATATGTACAAAGATGCTGTGCTTCCCAGAGTACTGGAGCAGGTTGTGAATTGCAAAGATGAGTTGGCTCAGTTTTACTTGATGGATTGTATAATTCAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGTTGTTGGGTGCTTACCCTCAACTTCAGCCATCTGTGGACATCAAGACAGTACTGTCCCAGTTAATGGAAAGGCTTTCGAATTATGCTGCTTCAAGTGCAGAGGTGTTGCCAGAGTTTTTACAAGTGGAAGCATTTTCCAAATTAAGCAATGCGATTGGCAAGGTGATAGAGGCACAGCCTGACATGCCCACTGTTGGAGTTGTAACTTTATATTCGTCCCTTCTCACCTTCACTCTTCATGTTCACCCTGATCGACTTGATTATGCAGATCAAGTTTTGGGAGCATGTGTGAAAAAACTCTCTGGCAAGGGAAAAATTGAGGACAACAAGGCAACTAAGCAGATTGTTGCTCTATTAACTGCTCCACTAGAGAAATATAATGATATTATGACTGCATTGAAGCTTTCAAATTATCCTCGCGTAATGGAATACCTTGACATTCCAACTACTAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAACGGAACACGCATTTCTACTTCAGAAAAGGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATCAAGGATTCTGATGGAATCCCTAATAATGAGCTGGATGAAGATGATTTCAAAGAGGAGCAGAATTCTCTTGCCCGCCTAATTCTGATGCTTTATAATGATGATCCAGAAGAAATGTTTAAGATCATTGATACTGTGAGGAAGCACATATTGAACGGGGGACCAAAACGCCTGCCTTTCACTGTTCCACCTCTTGTTTTTTCTTCTTTAAAGTTGGTCAGACAGTTGCAAGGTCAAGAAGAAAATCCTTTTGGAGATGATGCATCAACAACACCAAAGAAAATTTTTCAGCTTTTAAATCAGACCATCGAGACTTTGTCAGGTGTCCTGGCACCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGGCTGCAAATGACTGTGAATTGGAACCTGTTGCTTATGAATTTTTCACCCAAGCTTATATTCTATATGAAGAAGAAATTTCTGATTCCAGAGCACAGATCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCACGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGTATTCAGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTATGCATGCTCACATCTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGGGTCCTATTATGTCTTAAGCGGGCTTTAAGAATTGCAAATGCTGCCCAACAAATGGCAAATGCAGCACGAGGTAGCACTGGATCAGTAATGCTCTTCATTGAGATATTGAATAAGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTATCCAGGGCTTAATTGAGTTAATTATGAATGAGATGCAGAGTGATACCACAACTCAAGATCCAGCTGCTAATGCTTTCTTAGCCAGTACCATGCGCTATATAGAGTTCCAGAAACAAAAAGGGGGTGCGGTAGGCGAGAAGTATGAAGCCATCAAGGTTTCACATGCTGGATGA 2385 0.4294 MMLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVADAVEFVLQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDAVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAQPDMPTVGVVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGKGKIEDNKATKQIVALLTAPLEKYNDIMTALKLSNYPRVMEYLDIPTTKVMATVIIQSIMKNGTRISTSEKVEALFELIKGLIKDSDGIPNNELDEDDFKEEQNSLARLILMLYNDDPEEMFKIIDTVRKHILNGGPKRLPFTVPPLVFSSLKLVRQLQGQEENPFGDDASTTPKKIFQLLNQTIETLSGVLAPELALQLYLQCAEAANDCELEPVAYEFFTQAYILYEEEISDSRAQITAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMANAARGSTGSVMLFIEILNKYLYFFEKGNLQVTVAAIQGLIELIMNEMQSDTTTQDPAANAFLASTMRYIEFQKQKGGAVGEKYEAIKVSHAG 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01678 794 SUPERFAMILY ARM repeat 459 751 IPR016024 -
Gma01g01678 794 Gene3D - 466 775 IPR042491 -
Gma01g01678 794 PIRSF Retromer_Vps35 2 793 IPR005378 GO:0015031|GO:0030906|GO:0042147
Gma01g01678 794 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 790 - -
Gma01g01678 794 PANTHER VACUOLAR SORTING PROTEIN 35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Gma01g01678 794 Pfam Vacuolar protein sorting-associated protein 35 13 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01678 Gma-Chr1 52452461 52462203 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01678 K18468 - gmx:100811902 1545.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01678 01 52452461 52462203 Gma01g01678 01 52452461 52462203 ECH
Gma11g00719 11 6042327 6050820 Gma01g01678 01 52452461 52462203 ECH