Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01635 ATGAACCACAACAAACGAGGCGTGCTTACTCGTTTGAAGACTCTCGTCAACTCTCACTCTCAGGGCTTCCACTCCCCTGCGCCCAAACGACCAAAGCAAGATCCATCGTCAACAGAAAATGACTTAGATTACTCTGTTTGCCGAGGCCGCATTGACGTCTCAAAATGGAAGACTTTGGATGCAGAGGAGCTTGGTATAACTAGTTCTATGATTTCATACCCATCTCAGTTTGTCCTGAAACTTCTTCGGAGAAAAGGATTTGAGTCCTACTTAGTAGGTGGGTGTGTGAGAGATCTACTACTGAATAGAACTCCAAAAGATTTTGATGTTATCACCACAGCAAAGCTGATGGAGGTGAGAGCGCAGTTTCGTGGTTTAGCTCGTGCCGAAGTTGTTGGACGTCGTTTTCCAATATGCTTGGTTCATATAAAAGGTTCTGTAGTTGAGGTAACCAGTTTTGAGACAGTGGCACGAACTTCCAATAGGAAGGAACAATTTTTATACTCTCTGTTGCCCAAATGCAGTAATAAAAAGGACCTTTTTCGCTGCAAAAACTCCTTGCGCAGGGACTTCACAATTAATAGTTTATTTTATGACCCGTTTGCCAATAAAATCTACGATTATACCGATGGAATGGCTGATTTGAGGTCCTTAAAGCTAGAAACTGTTATCCCTGCTCAGATGTCCTTTAAAGAGGATCCTGGTAGAATTTTACGTGGCTTCAGAATTGCAGCTCGTCTTGGTTTATCATTATCAAGGGAGACTGAGGCTGCAATGTGGAAATATTCTTCACTTGTTAAGAGCTTGGACAAGAATAAAATTATGATTGAATTGAACTACATGCTGTCTTATGGCGCTGCTGAACCATCTTTGCATCTACTTTGGAAATTCAAATTACTTGAATTTTTACTTCCTGTGCATGCAGCATATCTTGATGAACAAGCTATTAAAGAAGATGCTCCGGCTTCCAATATGTTGATGAAATTATTCTTCTATCTCGATAATTTGGTTGCATGCGATCGACCTTGTGATTGCACTCTATGGGTTGGATTGCTAGCATTTCACCTGACATTAGTAAATAATCCTCAAGATGCTCTAGTAGTGTGGGCATTTGCTTCTGTTCTATATCATGGGGAGTGGGAAAAAGGTATTAAATTTGCCAAAGAACATGCAAAAATGTATGTTAATTTTGCACCTGAAATAAGGACGTCCAGTATATACAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAATTGGCATCTTTGGTGATGCACTCCATACCTGCTCTGGTTGAGAGCAACAGTCTTCTTCAATCCATGTCTAGATACCCATCTTTTCCACAATCTGACATGATATTTGTACCCAAGAAAGCAGGGAAACTTGCTTCTGCGATTTTCAAAATGCTGGCCAGTGATGTTGAATTTTACAAGACTGAAAGAAGAAAAAATTCAAAGATAAATTATGGCATGCTTGGGAAGGGACACCTTTCAGAGATTGCATTTGTTTTGGGCAAAATTGTTCTTGAAACTATGAGTAGTGGAACTGTTGGGGATGGGGAGGATTCTGAAGCTGGACAATGCCACCTTAAGACTGAGGGAACCAAAGAAATTGCTCAATCGCAACTTCCAGATCTAGTAAACCATGAAGTGGCGGCAATGAATGGTGAAGGACACCTTTTATCAATACCAAATTCAGAATGTAGGCAAGGAAAAAGCAAGAAACGGAAATTGGTTAAGAATAGATGCATTGCAAAGAAGAAAATGAGCTCCGGGAACCAAGAATTATCTGAGAAATTTGAATACAAGGAAAATAAAGAGGAGCAACAGAAGCTAGTTAAGTTAAGCCAGAAGGTTGATATGTCTACAGAGGATTCTTTGCCCAAAAAGAAAAATGATCACAGAAAACAGTTGATAAGTGATAGGAAGAAAATCACCAGTGCCAATAAAAGTTTTCTACACCAAGCTAAGCATATGAAGACGGATGAAGACAGCACATGCATGCCATCACAATCTACGGTATCCGAGAATCATCAGGTGATAGCTAACAGCAACATAGACGTGAATGCAAAAACAACAAATGAGTCGAACTTAAAGAAGAAGAAAAAGGGTTTATCACTAGTTGAAATGTTTAAAGGGAAATAA 2145 0.3958 MNHNKRGVLTRLKTLVNSHSQGFHSPAPKRPKQDPSSTENDLDYSVCRGRIDVSKWKTLDAEELGITSSMISYPSQFVLKLLRRKGFESYLVGGCVRDLLLNRTPKDFDVITTAKLMEVRAQFRGLARAEVVGRRFPICLVHIKGSVVEVTSFETVARTSNRKEQFLYSLLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTDGMADLRSLKLETVIPAQMSFKEDPGRILRGFRIAARLGLSLSRETEAAMWKYSSLVKSLDKNKIMIELNYMLSYGAAEPSLHLLWKFKLLEFLLPVHAAYLDEQAIKEDAPASNMLMKLFFYLDNLVACDRPCDCTLWVGLLAFHLTLVNNPQDALVVWAFASVLYHGEWEKGIKFAKEHAKMYVNFAPEIRTSSIYKSDEEIAKAVTKLASLVMHSIPALVESNSLLQSMSRYPSFPQSDMIFVPKKAGKLASAIFKMLASDVEFYKTERRKNSKINYGMLGKGHLSEIAFVLGKIVLETMSSGTVGDGEDSEAGQCHLKTEGTKEIAQSQLPDLVNHEVAAMNGEGHLLSIPNSECRQGKSKKRKLVKNRCIAKKKMSSGNQELSEKFEYKENKEEQQKLVKLSQKVDMSTEDSLPKKKNDHRKQLISDRKKITSANKSFLHQAKHMKTDEDSTCMPSQSTVSENHQVIANSNIDVNAKTTNESNLKKKKKGLSLVEMFKGK 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01635 714 MobiDBLite consensus disorder prediction 19 42 - -
Gma01g01635 714 SUPERFAMILY Nucleotidyltransferase 64 216 IPR043519 -
Gma01g01635 714 SUPERFAMILY Poly A polymerase C-terminal region-like 220 385 - -
Gma01g01635 714 Coils Coil 605 625 - -
Gma01g01635 714 Gene3D - 220 483 - -
Gma01g01635 714 Pfam Poly A polymerase head domain 90 219 IPR002646 GO:0003723|GO:0006396|GO:0016779
Gma01g01635 714 Gene3D Beta Polymerase, domain 2 56 217 IPR043519 -
Gma01g01635 714 MobiDBLite consensus disorder prediction 623 638 - -
Gma01g01635 714 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 5 712 - -
Gma01g01635 714 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 5 712 - -
Gma01g01635 714 Pfam Probable RNA and SrmB- binding site of polymerase A 248 310 IPR032828 -
Gma01g01635 714 CDD NT_ClassII-CCAase 75 216 IPR002646 GO:0003723|GO:0006396|GO:0016779
Gma01g01635 714 MobiDBLite consensus disorder prediction 616 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01635 Gma-Chr1 52071247 52078355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01635 - - gmx:100794882 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01635 01 52071247 52078355 Gma01g01635 01 52071247 52078355 ECH
Gma01g01635 01 52071247 52078355 Gma11g00773 11 6458827 6465057 GST