Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01621 ATGGCCAGCATAAAGCCTTTGCCGGAGGCTGTGCGTAGCTCACTGCGTTCTGGCATTTTCCTCTTCGACTTCACGCGTGTCGTCGAGGAACTTGTTTTCAATAGCCTCGATGCTCGTGCCACAAAGGTATCAGTGTTTGTTAGTACTAGGAGCTGCTATTTGAAAGTTGTTGATGACGGAAGTGGAATCCCTCGAGACGAGCTGGAGTTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTGGTTGACCTGAATGCCACGAGTGAGAACTTCGGTTTTCGTGGGGAAGCTTTAGCTTCCATATCTGAAGTCTCTTTGCTGGAAATTGTGACAAAAACATATGGAAGGCCCAATGGATATCGAAAAGTATTGAAGGGGTGCAAGTGTTTATATCTTGGTATTGATGATGATAGAAAGGAAGTGGGCACCACAGTTGTTGTCCGTGATTTATTTTACAACCAACCAGTTCGGAGAAAATACATGCAATCCAGTCCCAATAAGGTACTGCAATCAATCAAGAACTGTATAATGCGGCTTGCACTTGTGCGCCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAGCTCTTTTGCACACATTCTGCTTCTTCTCCTCTGCCACTTGTAACCAGTGGCTTTGGGGTAGAGGTCGCAAGCTCTCTTCACAATTTAGAAGTTGAGAATGATATTGTAAAGCTTTCTGGATATATATCTGGTCCTTGCAATACTGTGTATACGAAGGTGATTCATATTTCTAATATAAAAAATGTCAACTCACAATTTGTTTGCAAGGGCCCAGTTCACAAGCTTGTGAGTCAACTGGCTAATAGGCTTGAGCATCTGAACTCATGGAATACTGATAAAGAATTCCGAAGCAAGAAGAGAACCAGGTGTCAACCATGTCCAGCTTATCTCTTGAATTTGAGTTGCCCCCGATCTTTGTATGATTTGGCCTTTGAGCCATCAAAAACTCATGTTAAATTCAAGGATTGGACTCCTATACTAAACTTCATTGAGAAGGCCATCAAACAATTCTGGGAGGAAAACGTAGCTTGTGTAGATCCGTCCAATGAAGCCACATACATGGTAGAAGATCAACAAGAGAAAGCAGATGTCAACATCATTTCAGCAGTATCAGATATGTCAAAGTTTAGAAACCAAAATCGTAAGGATTGCCTAGATCTCTTTTTTTCTACTTCAGACAATCTAATTGAAGATGACTATCATCAATCCAAAAGGGAAGATGTTGATTACTTTGGAGCCACAATGTTCAAAGTGCAACAAAGTAAGGGAGACTTTCTTCTTCAGACTGGTTATTCTGGCAACTTATTGGATGGTTCTTATGCCAAGTGCAACTCCACTGTGATGAGAAAGCATAATAGTTTGTTGATGCATGATAGCAATAGTTTACTGGAAGGTGATAACTTTTTTTATGGTGAAATTCCTGCTGTAGAAAGTTTCAACATTGATGTACCTTTTGATGCACCGAGTTCTTCACATGGAAGAAGATTCCATAAAGTAGAAGCTGATGTGATCAATGAATCATTTGAAGATGATTTACTTTATAATAGCTGCAGTGGGTATGGTTATGATGTAAAGATTAATGGGGATTTGCAACAACCTTTTCTAAAGAGATGCTCTATGCTAGGAAGTATCCTGCATGAGAAGGCTTTGTTCGTAAATGATGAACATGAACTCCAAACTGATGGCTTTTGGAGCAAACATAATACAGAGGAGGATTATAGAAGTGGTAAGGATTTATATGTCCATCGTTGTCCAGAAGTCACAAAAAAATTAAAGATTACTAAAGATTCTGATTTCCTAGTTAGACCGTTGTCTGAAGAAAATTGTCTCCCTCCAGATTCATGCTATTCAGCATTACGAATAGGAAGCTCTGGGTCAGATGATCAGTTGTTAAATTTTGAATGGCATCCTGTCCACCAAATCCCCTCATCTCAAGCATCTGCATTGGGTGTTTGTCATACAACTGATATTGAGGATGAGCTTGGAGAAATATCTAGATACTATAAAAGGATCCATCATACAAAACATTTTGATGATAGAGAGGCTGATTGCAGATTCAGCTACAATATGTCAAGGAATGCCAACCAACATCGCCGTGCATCAAGTTTTGCAAATATTGGATTTAATTTTGATGTTGCTGGTGATTGTGGTGAAATATTCAACAGACTAGTTGACAGGCCTGATTTCGGTGATATACATTCTTCAAAAAGGTCAGATATTTTAAACGAGGAGCCAGACTGGCTGTTGTCCAAGTCATGTATTAAAAGCTGCAAGAGACCTAACAAGAACAAAGGCAAAAGGGATCGATTTAGAAATTCAACTTTGGAGGAGAATCTTGAAAGATCTAGAAGAAGCTTTTCCGCTCCTCCTTTTCATAGAAGCAAAAGGAGGTTTTTCTCTTTAAATCATCCTTCAGAAATGATAGCCAAAAGACAGATTGGCCGAGTGTCCAACCCTGCTTTCAATCATCAAGAAGCTAGTAATTTTAAATATCCGCAACAGTCTCCTGTTGCTCTTCACCAGAGCACTGAAGATTTCTTATTGCAAGAATTCAAAATTAATGTGAAACAAACTACAGAGGTTCTGGGAGATATGCAGGATAATGACATTGCAGATATTGATGAATTTGAAAGTTTCAACATTCAAAAGAGTGCTCCATTTGGGGAATTGATCTCAAGGGATGTGCAAGATTCCATAGATTATGGGACTAAATGGAGGAACTGCTCACCCAAAATTACAAAGAATGATAAACTGGCTAACATTCAAAGTCAAAACAATATACTTGACATTTCTTCTGGATTCTTGCATCTTGCTGGAGACTCATTGATTCCTGAAACTATCAGTAAGAAATGCCTAGAGGATGCTAAAGTTCTGCATCAAGTGGACAAAAAATTCATTCCAGTTGTGGCTGGCAGAACCCTTGCTGTTATTGATCAGCATGCTGCAGATGAAAGAATCAGACTGGAAGAATTGCGTCAAAAGGTATTGTCAGGAGAAGAAAAAGCAATAACCTATCTAGATGCTGAACAGGAACTGGTATTGCCAGAGATTGGTTATCAGCTACTTCATAGTTATAGTGAACAGATTAAAGATTGGGGCTGGATCTGCAACATTCATGCTCAAAATTCTGAATCCTTTAGAAGGAGTTTGGATATCCTCAACAGACCACAAATGGCCGTCACACTTATTGCGGTACCGTGTATTTTAGGGGTCAAATTAAATGATGTTGATCTTTTAGAATTTCTTCAGCAGCTTGCTGACACTGATGGATCATCAACAATTCCACCCTCTGTCTTACGAGTGCTAAATTTGAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCATCAGAATGTTCCCTTATAGTTGAAGAGCTAAAACATACATCACTCTGTTTCCAATGTGCTCATGGGCGACCAACAACTGTTCCTCTAGTCAACTTGGAGGCACTGCATAATCAGATAGCCAAGCTTCGACTGATGAACGAGCGTTCAAGTGATGAGTGGCATGGATTACATAGACATAAAGTGTGCATTGAACGTGCAGCACAGCGTTTAAATTTTGCTAGAGGAATTTGA 3627 0.3943 MASIKPLPEAVRSSLRSGIFLFDFTRVVEELVFNSLDARATKVSVFVSTRSCYLKVVDDGSGIPRDELELVGERYATSKFLNLVDLNATSENFGFRGEALASISEVSLLEIVTKTYGRPNGYRKVLKGCKCLYLGIDDDRKEVGTTVVVRDLFYNQPVRRKYMQSSPNKVLQSIKNCIMRLALVRPNISFKVVDIEREDELFCTHSASSPLPLVTSGFGVEVASSLHNLEVENDIVKLSGYISGPCNTVYTKVIHISNIKNVNSQFVCKGPVHKLVSQLANRLEHLNSWNTDKEFRSKKRTRCQPCPAYLLNLSCPRSLYDLAFEPSKTHVKFKDWTPILNFIEKAIKQFWEENVACVDPSNEATYMVEDQQEKADVNIISAVSDMSKFRNQNRKDCLDLFFSTSDNLIEDDYHQSKREDVDYFGATMFKVQQSKGDFLLQTGYSGNLLDGSYAKCNSTVMRKHNSLLMHDSNSLLEGDNFFYGEIPAVESFNIDVPFDAPSSSHGRRFHKVEADVINESFEDDLLYNSCSGYGYDVKINGDLQQPFLKRCSMLGSILHEKALFVNDEHELQTDGFWSKHNTEEDYRSGKDLYVHRCPEVTKKLKITKDSDFLVRPLSEENCLPPDSCYSALRIGSSGSDDQLLNFEWHPVHQIPSSQASALGVCHTTDIEDELGEISRYYKRIHHTKHFDDREADCRFSYNMSRNANQHRRASSFANIGFNFDVAGDCGEIFNRLVDRPDFGDIHSSKRSDILNEEPDWLLSKSCIKSCKRPNKNKGKRDRFRNSTLEENLERSRRSFSAPPFHRSKRRFFSLNHPSEMIAKRQIGRVSNPAFNHQEASNFKYPQQSPVALHQSTEDFLLQEFKINVKQTTEVLGDMQDNDIADIDEFESFNIQKSAPFGELISRDVQDSIDYGTKWRNCSPKITKNDKLANIQSQNNILDISSGFLHLAGDSLIPETISKKCLEDAKVLHQVDKKFIPVVAGRTLAVIDQHAADERIRLEELRQKVLSGEEKAITYLDAEQELVLPEIGYQLLHSYSEQIKDWGWICNIHAQNSESFRRSLDILNRPQMAVTLIAVPCILGVKLNDVDLLEFLQQLADTDGSSTIPPSVLRVLNLKACRGAIMFGDSLLPSECSLIVEELKHTSLCFQCAHGRPTTVPLVNLEALHNQIAKLRLMNERSSDEWHGLHRHKVCIERAAQRLNFARGI 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01621 1208 Pfam DNA mismatch repair protein, C-terminal domain 218 350 IPR013507 GO:0005524|GO:0006298|GO:0030983
Gma01g01621 1208 Coils Coil 994 1014 - -
Gma01g01621 1208 Pfam MutL C terminal dimerisation domain 969 1130 IPR014790 GO:0005524|GO:0006298
Gma01g01621 1208 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 94 100 IPR014762 -
Gma01g01621 1208 PANTHER DNA MISMATCH REPAIR PROTEIN MLH3-RELATED 1 1166 IPR028830 GO:0006298
Gma01g01621 1208 SMART MutL_C_2 970 1130 IPR014790 GO:0005524|GO:0006298
Gma01g01621 1208 MobiDBLite consensus disorder prediction 772 800 - -
Gma01g01621 1208 Gene3D - 219 357 IPR014721 -
Gma01g01621 1208 Gene3D - 973 1161 IPR042120 -
Gma01g01621 1208 Gene3D - 2 208 IPR036890 -
Gma01g01621 1208 Gene3D - 1014 1125 IPR042121 -
Gma01g01621 1208 SMART DNA_mis_repair_2 214 352 IPR013507 GO:0005524|GO:0006298|GO:0030983
Gma01g01621 1208 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 23 202 IPR036890 -
Gma01g01621 1208 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1166 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Gma01g01621 1208 SUPERFAMILY Ribosomal protein S5 domain 2-like 199 352 IPR020568 -
Gma01g01621 1208 Coils Coil 1164 1184 - -
Gma01g01621 1208 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 118 - -
Gma01g01621 1208 TIGRFAM mutl: DNA mismatch repair protein MutL 3 331 IPR002099 GO:0005524|GO:0006298|GO:0030983
Gma01g01621 1208 SUPERFAMILY DNA mismatch repair protein MutL 968 1161 IPR037198 -
Gma01g01621 1208 MobiDBLite consensus disorder prediction 780 800 - -
Gma01g01621 1208 CDD HATPase_MutL-MLH-PMS-like 11 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01621 Gma-Chr1 51897915 51908296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01621 K08739 - gmx:100788019 2419.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01621 01 51897915 51908296 Gma01g01621 01 51897915 51908296 ECH
Gma01g01621 01 51897915 51908296 Gma11g00791 11 6588674 6597923 GST