Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01572 ATGGCGACCGAATCCGGCGCGAACGGTCCTTCGTCCAGTTCCGCGGAATCTTTCATTGGTTGCTTCATAAGCTTGATTTCCAAGTGCGAGATTCGCTACGAAGGCGTTCTCTATTTCCTTAACATTCAAGATTCCACCATCGGCTTGAAGAACGTTAGATCCTATGGAACAGAGGGGAGAAAAAAAGATGGTCCACAAGTTCCTTCAAGTGATAAGGTTTATGAATACATTCTTTTCCGAGGAAATGATATTAAGAATTTGCAGATCAAATCACCCACCCCATCTTCCAAATCAGAAGAGCAGGTTTTTAGTGATCCAGCTGTTATTCAGctgccaagttctccagtggctgggttgctaagttctccagtggcCTCAGTTGGTGGCAGAAGTTTGACAGAATCAATTCAAAGGCAAGATAGCCCTGCAATATCCAGTAAAGCCTTTCCTTCTGGGTTGCCTTCTCATCAGTCTGTAACTCAGCTGGGACCTTCAAATTTATCTGATGCTACTCAAGTTGCTAGTCATCCATCTTTTTCTGCAGCAATGTATTGGCAAGGTCCCAGTGGGATATCTAGCAGTAGTTATCATTCTCTGCTACAGTCTAGTTCTCTTCACCCCACATCACTGGCAGCATCCTTAGTTGTGCAGAATCAGATGCAAAATGCAGAAACTCAGGTACCTATAAACGGGGGATGGACAGGTTTATCAGAGTATGGTCTACCTGTATCTTCTGCCATGACTTCTCTTGTAAATCAGACTCATTCACCTTCTCTTACCTCTTTAAAAAATTCTGATTCTCTTGATATTCCATCCCTTTTGTCTACTAAGACACCTGTGTCATATTCTCCATCCATGACTTTTGATGGATCAAACATGCCTCAGTTTTCTTCAACACTCCAAGACATAAATTCTATTCAAGCTCAAATATCTGGAAACATTTGTCCTGACCCAAGGCCAATTCATCCTCAACATTCTGTCCATCGTTCTGCTCCTTCATATGTAGATTCTACTTCAGGTTCCTTGCCAACAGCAACTTCTTTGTTAACCCCGGATCAATTTGCCTATCCTAGAGAACAGTTATTGTCTTTATCACATTTAAACCCTACTCAGAAGGACATGGGTTCTCTGACTCTAACATCCTCTGGTTCCTCTGCATTAATTCCTTCTCCAGCATCTCAGGCACCATTGCTTCCACTACCAACTTCAGTGCAAAAGcctccatacaCAGCTCCACAATACACTGAGGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAAAAAAGATGAAGTATGGGGTTCTCTTGGAAAGACAACTACAAAAATAGAGGGAGTGGCGAATAATGCTTCTCTCAGTTTGGGTGACAGAGAATGTCATGGGGTGATACCAAACCCTAAGACTGCATACAAGAAAGATGACTTTTTTGATACAATTTCTTGCAACTCTTTGACTCATGGATCAAGGAATGGACAAAATCGTTTCTCTGAGAGAATGAAACAGGATACTGAGACATTTGGCAATTTCCAGCAGAGGCCTAATTTTACTAATGGTGGTTATGGTGCTGGACGGGGTGCTAATTTCAGGGGCTCAAATAATTGGGGAAGGGGTTATGGCTACAATGGGAGAGGGCGTGGTCCAAACTTTCCTTTCTAG 1656 0.4088 MATESGANGPSSSSAESFIGCFISLISKCEIRYEGVLYFLNIQDSTIGLKNVRSYGTEGRKKDGPQVPSSDKVYEYILFRGNDIKNLQIKSPTPSSKSEEQVFSDPAVIQLPSSPVAGLLSSPVASVGGRSLTESIQRQDSPAISSKAFPSGLPSHQSVTQLGPSNLSDATQVASHPSFSAAMYWQGPSGISSSSYHSLLQSSSLHPTSLAASLVVQNQMQNAETQVPINGGWTGLSEYGLPVSSAMTSLVNQTHSPSLTSLKNSDSLDIPSLLSTKTPVSYSPSMTFDGSNMPQFSSTLQDINSIQAQISGNICPDPRPIHPQHSVHRSAPSYVDSTSGSLPTATSLLTPDQFAYPREQLLSLSHLNPTQKDMGSLTLTSSGSSALIPSPASQAPLLPLPTSVQKPPYTAPQYTEEFDFEAMNEKFKKDEVWGSLGKTTTKIEGVANNASLSLGDRECHGVIPNPKTAYKKDDFFDTISCNSLTHGSRNGQNRFSERMKQDTETFGNFQQRPNFTNGGYGAGRGANFRGSNNWGRGYGYNGRGRGPNFPF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01572 551 ProSiteProfiles DFDF domain profile. 406 442 IPR025762 -
Gma01g01572 551 SMART FDF_2 412 510 IPR019050 -
Gma01g01572 551 ProSiteProfiles TFG box profile. 490 510 IPR025768 -
Gma01g01572 551 Gene3D - 10 93 - -
Gma01g01572 551 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 13 542 - -
Gma01g01572 551 Pfam FDF domain 414 508 IPR019050 -
Gma01g01572 551 CDD LSm14_N 15 89 IPR025609 -
Gma01g01572 551 SUPERFAMILY Sm-like ribonucleoproteins 17 92 IPR010920 -
Gma01g01572 551 MobiDBLite consensus disorder prediction 131 158 - -
Gma01g01572 551 SMART LSM14_2 12 113 IPR025609 -
Gma01g01572 551 PANTHER SCD6 PROTEIN-RELATED 13 542 - -
Gma01g01572 551 Pfam Scd6-like Sm domain 18 91 IPR025609 -
Gma01g01572 551 ProSiteProfiles FFD box profile. 468 483 IPR025761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01572 Gma-Chr1 51265556 51272090 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01572 K18749 - gmx:102669894 1018.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01572 01 51265556 51272090 Gma01g01572 01 51265556 51272090 ECH
Gma01g01572 01 51265556 51272090 Gma09g02030 09 45877349 45883406 GST